Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10264g00001 GTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAAAATGGTTTATGTGACGTGGATAGCAATGGAGCTGCTTCCAGCAAAGCAACAAGTTCAAAAACTGCTGCAGGGAGCAGTAAGGGAAAAGGCGGAAGAGGAAAGGGGACACCTAAAGCTAGCTTGTCCAGCAGAATAACTGATGATCTTTGGTCTTGTGAGCAATGTACCTATGCAAATGCCAGATCGGCCACCGCATGCCATATATGCAATCGACAGCGTCGATGA 267 0.4569 VTRNYFENLVRALENGLCDVDSNGAASSKATSSKTAAGSSKGKGGRGKGTPKASLSSRITDDLWSCEQCTYANARSATACHICNRQRR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10264g00001 88 MobiDBLite consensus disorder prediction 20 56 - -
Trme10264g00001 88 MobiDBLite consensus disorder prediction 21 39 - -
Trme10264g00001 88 SUPERFAMILY Ran binding protein zinc finger-like 61 87 IPR036443 -
Trme10264g00001 88 Gene3D - 58 88 - -
Trme10264g00001 88 ProSiteProfiles Zinc finger RanBP2 type profile. 60 88 IPR001876 -
Trme10264g00001 88 ProSitePatterns Zinc finger RanBP2-type signature. 64 83 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10264g00001 Trme-Chr10264 133 399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10264g00001 1 87 ARIADNE family AT1G65430 44.828 1.58e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10264g00001 K11968 - vum:124843329 111.309