Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10262g00001 ATGAACTATTTGCACAACAGCACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAACCTTCTCGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTCGGCTTGTCTCGAATGAAGTACAATACGTTCCTTTCTTCTAGGTCAACTGCGGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGTGATGTTTTTAGCTACGGGGTCATATTGTGGGAGCTCTCTACTCTGCGGCAACCCTGGGGAGGAATGAATCCCATGCAAGTTGTTGGTGCTGTCGGTTTCCAGCATCGCCGTCTGGACATTCCAGATGATGTGGACCCTACCATTGCAAATATTATTAGACAATGTTGGCAGACAGATCCAAAGTTGAGGCCCACTTTTGCTGAAATCATGGCATTACTGAAGCCATTGCAGAAGCCAATTACTGGTTCTCAAGCGCATAGAGCAAGTGCTCACAACA 490 0.4531 MNYLHNSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKYNTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLRQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPTIANIIRQCWQTDPKLRPTFAEIMALLKPLQKPITGSQAHRASAHN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10262g00001 163 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10262g00001 163 Gene3D Transferase(Phosphotransferase) domain 1 1 156 - -
Trme10262g00001 163 FunFam PAS domain-containing protein tyrosine kinase family protein 1 161 - -
Trme10262g00001 163 SUPERFAMILY Protein kinase-like (PK-like) 1 143 IPR011009 -
Trme10262g00001 163 Pfam Protein tyrosine and serine/threonine kinase 1 143 IPR001245 GO:0004672|GO:0006468
Trme10262g00001 163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 11 23 IPR008271 GO:0004672|GO:0006468
Trme10262g00001 163 PRINTS Tyrosine kinase catalytic domain signature 52 62 IPR001245 GO:0004672|GO:0006468
Trme10262g00001 163 PRINTS Tyrosine kinase catalytic domain signature 115 137 IPR001245 GO:0004672|GO:0006468
Trme10262g00001 163 PRINTS Tyrosine kinase catalytic domain signature 5 23 IPR001245 GO:0004672|GO:0006468
Trme10262g00001 163 PRINTS Tyrosine kinase catalytic domain signature 71 93 IPR001245 GO:0004672|GO:0006468
Trme10262g00001 163 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 152 - -
Trme10262g00001 163 SMART serkin_6 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10262g00001 Trme-Chr10262 1 1037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10262g00001 1 158 MAP Kinase Kinase Kinase AT1G73660 82.278 2.33e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme10262g00001 PK_Tyr_Ser-Thr 7.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10262g00001 - - ccaj:109799481 317.775