Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102625g00001 CTTAGCAAAGGCTTTATTGCCATTGTTGCTGTTTCAGTTTTTGTAGCATTTGTTTTATGTACTGCTGCTGCCTATGTCATGTTCAAATTCCGAGTTCATGTTAGTCAACCAACATCGACTCCACGACTTTCACATTGTTCTCTTACCAAAGCATCAGTTACCGCTACTGGATCATTAATTGGAGACGGAGGGATTGGTTCGGTTTCCTCTTTATTTGAATCTAGCATTGCTGCTTATACAGTGTCTGCTAAGACTTTCAGTATGAATGACGTTGAGAAAGCTACTGATAATTTTCATGCTTCAAGAATCCTTGGAGAAGGTGGTTTTGGTCTTGTTTACAGTGGCGTCCTCGGAGATGGGACAAAAGTGGCAGTCAAGGTTCTAAAAAGGAGGGAGGATCATCAAGGTGATCGGGAATTCTTAGCTGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAATCTGGTCAAGTTGATTGGTATATGTGCT 489 0.4131 LSKGFIAIVAVSVFVAFVLCTAAAYVMFKFRVHVSQPTSTPRLSHCSLTKASVTATGSLIGDGGIGSVSSLFESSIAAYTVSAKTFSMNDVEKATDNFHASRILGEGGFGLVYSGVLGDGTKVAVKVLKRREDHQGDREFLAEVEMLSRLHHRNLVKLIGICA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102625g00001 163 ProSiteProfiles Protein kinase domain profile. 98 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme102625g00001 163 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Trme102625g00001 163 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
Trme102625g00001 163 PANTHER OS01G0750732 PROTEIN 2 163 - -
Trme102625g00001 163 FunFam Somatic embryogenesis receptor kinase 1 68 163 - -
Trme102625g00001 163 SUPERFAMILY Protein kinase-like (PK-like) 70 162 IPR011009 -
Trme102625g00001 163 Pfam Protein tyrosine and serine/threonine kinase 100 162 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102625g00001 Trme-Chr102625 3 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102625g00001 1 162 Receptor kinase-like Gene Family AT5G56890 54.706 1.00e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme102625g00001 PK_Tyr_Ser-Thr 1.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102625g00001 - - lja:Lj4g3v2141380.2 234.187