Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102602g00001 ATGCTAAAGTTTCTAAAGTATTTCCTTCTTTCAAGGAACGTCTTCACCATCTGCAGAATTTGCTTCGGAAAGTCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATAGTTGTTGAGTATCGTGGAGAGCAGGTAAGGCGTAGTGTCGCCGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTAT 216 0.4259 MLKFLKYFLLSRNVFTICRICFGKSGIHGWGLFARRDIQEGDIVVEYRGEQVRRSVADLREAKYRSEGKDCY 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102602g00001 72 Gene3D SET domain 10 72 IPR046341 -
Trme102602g00001 72 Pfam SET domain 29 56 IPR001214 GO:0005515
Trme102602g00001 72 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 19 68 IPR044570 GO:0042800|GO:0051568
Trme102602g00001 72 SUPERFAMILY SET domain 6 71 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102602g00001 Trme-Chr102602 96 532 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trme102602g00001 SET 6.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102602g00001 - - thj:104802071 110.538