Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme102564g00001 | GGTCGCTTTGACATTATTTCACTTACTGGATCCTATGTCCATAATGAATTTGATGGTCGTTCTGGTGGTCTCAGTGTATGCTTATCTCATTCTGATGGGCAACTTGTAGGCGGAAGCATTGCTGGACCCCTTAAAGCTGCTGGTCCAGTTCAGTCATTTCATGCATGGGGTGGAAAATCCTGA | 183 | 0.4536 | GRFDIISLTGSYVHNEFDGRSGGLSVCLSHSDGQLVGGSIAGPLKAAGPVQSFHAWGGKS | 60 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme102564g00001 | 60 | ProSiteProfiles | PPC domain profile profile. | 1 | 60 | IPR005175 | - | |
| Trme102564g00001 | 60 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 1 | 51 | - | - | |
| Trme102564g00001 | 60 | Gene3D | - | 1 | 55 | - | - | |
| Trme102564g00001 | 60 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 1 | 51 | IPR039605 | GO:0003680 | |
| Trme102564g00001 | 60 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 1 | 52 | IPR005175 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme102564g00001 | Trme-Chr102564 | 174 | 635 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme102564g00001 | 1 | 51 | AT-hook Motif Nuclear Localized (AHL) Family | AT3G04590 | 60.784 | 1.46e-14 | 63.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme102564g00001 | - | - | rvl:131301204 | 87.8113 |