Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102506g00001 TCCCGCGACTGCGCCGTTTGTTTGTCCAAGTTTGAACAAACCGATCTCCTCCGTCTCCTCCCTCTCTGCTGTCACGCTTTCCACACCGAATGCATTGATGCTTGGCTCCGTTCGAATCTCACGTGTCCGCTCTGCCGATCAGCCGTCGTTGTTTCAGAGTCCGAGCTTATGAAGATTTTCCGGCCTTCTTCCGCTTCCTCTGGAAACAGCTTCCGTTTGGAGATAGGAAACGTTAGTAACCGCCGTGGAGCCGGAACCACCGCATCTAACAATGTCAGTGGAGAAACTGATCGGAGATCGTACTCTGTCGGTGCGTTTGAGTATTTCGTTGACGAGGAAGCTGAGATTCCGTTTGGTCACACTAATCGGAGAATTGTTTCCGGTGAGAAAGATGATTCACCGGCGTCGGAGGTTCCGGTGGTTTCTCAGGCGATTTTGGTCGGTGAAGGTAGTTGGTTGAAGGATTATGTTGATAATCTATCGAATTTGGTTTCATTTTCATTTGGAGGTTCTGGAAGGTTCTTCACTGGGAGCAGTAGGCGAAACGACGTCGTTCATGATTTTGAAGTTCAAGCTAATAATGGTTTTGGGGAAGAAATTACGGAGATGTTTAGATGGATTTCAGGAGTTTGA 633 0.4818 SRDCAVCLSKFEQTDLLRLLPLCCHAFHTECIDAWLRSNLTCPLCRSAVVVSESELMKIFRPSSASSGNSFRLEIGNVSNRRGAGTTASNNVSGETDRRSYSVGAFEYFVDEEAEIPFGHTNRRIVSGEKDDSPASEVPVVSQAILVGEGSWLKDYVDNLSNLVSFSFGGSGRFFTGSSRRNDVVHDFEVQANNGFGEEITEMFRWISGV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102506g00001 210 SUPERFAMILY RING/U-box 3 52 - -
Trme102506g00001 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 52 IPR013083 -
Trme102506g00001 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 116 - -
Trme102506g00001 210 SMART ring_2 4 45 IPR001841 -
Trme102506g00001 210 Pfam Ring finger domain 3 46 IPR001841 -
Trme102506g00001 210 CDD RING-H2_EL5-like 3 46 - -
Trme102506g00001 210 ProSiteProfiles Zinc finger RING-type profile. 4 46 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102506g00001 Trme-Chr102506 48 680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102506g00001 2 59 C3H Transcription Factor Family AT3G18930 60.345 5.59e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102506g00001 K10663 - gmx:100804962 249.21