Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10247g00001 GAGAAGAATCCTAAAATCTCTGACTTTGGTTTAGCCAGGATATTTGGAGGAAAAGAGACGGTAGCGAACACAGAAAGAGTGGTTGGAACATACGGTTACATGTCTCCAGAGTACGCACTTGATGGACATTTTTCAGTGAAGTCGGATGTTTTTAGTTTTGGTGTTGTGGTACTTGAGATTATAAGTGGAAAAAGGAACACTGGATTTTATCAAGTAGAACATGACTTGAGCCTTCTAGGATATGCATGGCATTTGTGGAAAGTAGGGAGGGCATTGGATTTCATGGACCAAACACTATGTGAAACATNNNNNNNAGAAGAATGTTTGAAATGTGTGAATATAGGATTACTATGCTTACAAGAAGACCCAAATGAACGTCCAAACATGTCAAATGTTGTTTTTATGCTGGGAAGTGAATCTAATACTCTTCCAACTCCTAAGGAACCAGCCTTTGTTATTAGAAGATGTCCTTCAAGCAGAGCATCTACATCTAGTAAAATGGAAACTTTTTCACGTAATGAATTGACTGTCACTTTGGAAAATGGAAGGTAG 552 0.3786 EKNPKISDFGLARIFGGKETVANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHDLSLLGYAWHLWKVGRALDFMDQTLCETXXXEECLKCVNIGLLCLQEDPNERPNMSNVVFMLGSESNTLPTPKEPAFVIRRCPSSRASTSSKMETFSRNELTVTLENGR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10247g00001 183 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10247g00001 183 SUPERFAMILY Protein kinase-like (PK-like) 3 169 IPR011009 -
Trme10247g00001 183 Pfam Protein tyrosine and serine/threonine kinase 4 134 IPR001245 GO:0004672|GO:0006468
Trme10247g00001 183 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 180 - -
Trme10247g00001 183 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 15 141 - -
Trme10247g00001 183 Gene3D Transferase(Phosphotransferase) domain 1 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10247g00001 Trme-Chr10247 1 1003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10247g00001 1 178 Receptor kinase-like Gene Family AT4G23150 48.634 2.39e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme10247g00001 PK_Tyr_Ser-Thr 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10247g00001 - - var:108339799 327.791