Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10246g00001 ATGTCTCCTCCTCAGCCACGTCCTGTCCACCCAAAAATCTGGCAGTCATGTGCCGGCCCCGCCGTCACCATTCCAAAACTCCACTCTAAAGTTTACTACTTCCCACTAGGTCATTTGGAACACGCCTGCCCTTTTCCTAACCCTAACACAATCTCCATGATTGATAATCACCGTCCTTYTATTCCCTGYATCATCTCCGCCGTTGATCTCCTTTCCGATCCTCACACCGATGAGGTATTCGCCAAACTGATCTTAACTCCCATAACTGACACCCATGTCCAAGAACCTCCTGTGGGTCCTGACCAAGAAGACGATGGAGAAAACGTTGTTTCTTTTATCAAGATTCTAACGCAGTCTGATTCAAATAACGGTGGTGGATTCTCCGTACCTCGCGAATGCGCTGACTTGATTTTCCCCGAGCTTGACTTTACGGATCCAATGCCGTCTCAACAACTCTACATCAACGACGTTCATGGTGGAGTCTGGAAGTACACCCATGTCTATCGTGGGAAACCTAAGAGACACTTGTTCACCACTGGTTGGACTCCGTTTGTTAACGAAAAAAAACTCGTTGCAGGAGATACCGTCGTTTTCTTGAAAAATTCGACCGGAAATATGTTCGTAGGTATCCGCCGGAACATGAAGTTTGCTGCAGCTGAAGCGGCGGCAGCACAGAAGAAGAAGGAGGAGGGTGATGAGAAGGTTGAGGGTTTTTCNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCGGTTATAGAGGCGGTGGAACGGGCGGAGAAGAATATGGCATTCGAAGTTGTATATTACCCGACTCCTAATTGGAGTGATTTTGTGGTTGAAGCTAAGGTTGTGGATGAGGCTATGAAGATTGGTTGGGAATCTGGAATGAGAGTTAAGCTTATTTTGAAGAAGGAGGAATGTTCAAAGAAGCCATTGTGTCAGCCTCAAGGGGCAATCTCAAATGTCTCTATTGTCCCTAATTGGCGCATGCTTAAG 999 0.4535 MSPPQPRPVHPKIWQSCAGPAVTIPKLHSKVYYFPLGHLEHACPFPNPNTISMIDNHRPXIPCIISAVDLLSDPHTDEVFAKLILTPITDTHVQEPPVGPDQEDDGENVVSFIKILTQSDSNNGGGFSVPRECADLIFPELDFTDPMPSQQLYINDVHGGVWKYTHVYRGKPKRHLFTTGWTPFVNEKKLVAGDTVVFLKNSTGNMFVGIRRNMKFAAAEAAAAQKKKEEGDEKVEGFSXXXXXXXXXXXAVIEAVERAEKNMAFEVVYYPTPNWSDFVVEAKVVDEAMKIGWESGMRVKLILKKEECSKKPLCQPQGAISNVSIVPNWRMLK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10246g00001 333 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Trme10246g00001 333 CDD B3_DNA 111 212 IPR003340 GO:0003677
Trme10246g00001 333 Coils Coil 251 262 - -
Trme10246g00001 333 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 333 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme10246g00001 333 FunFam Auxin response factor 110 214 - -
Trme10246g00001 333 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Trme10246g00001 333 SMART B3_2 112 214 IPR003340 GO:0003677
Trme10246g00001 333 Pfam Auxin response factor 255 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme10246g00001 333 Gene3D - 109 214 IPR015300 -
Trme10246g00001 333 SUPERFAMILY DNA-binding pseudobarrel domain 105 218 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10246g00001 Trme-Chr10246 675 1673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10246g00001 1 310 B3 DNA Binding Superfamily AT1G77850 43.452 3.71e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme10246g00001 B3 3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10246g00001 - - tpra:123904492 580.482