Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102335g00001 ATGGCGGCTTCACGGCGGCTCCGGGAGCTGCAATCCCAACCAGGAAACAAGATCTGCGTCGATTGTTCTCAGAAGAATCCACAGTGGGCATCAGTGTCCTACGGCATCTTCATGTGCCTGGAATGCTCCGGCAAACACCGTGGTCTCGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGATGCTTGGTCCGAAATCCAAATCAAAAAAATGGAAGCTGGTGGTAACGACAATCTCAACGCTTTCCTTGCACGCTATTCAATTCCTAAGGAAACCGATATCGTTACAAAGTATAACACCAACGCCGCTTCCGTTTACCGTGACAGGATNCAAGCTATGGCAGAAGGTCGTCCATGGCGCGATCCGCCTGTTGTTAAGGAGAATTTTGGTTCCAAGGGGAGGCCGCCGCTGTCGTCACAGACTCGTAGGAATAACGATTCCGCTTGGGATGATTGGGATGGAGAAGGAAATTCTGGAAGTTCCGTCGATGTGAGGAGTAAGTCCACTGGGGATTTCAGAAGCTTGAACGGCGGTGGAGCGCCGGTGAG 551 0.5209 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRXQAMAEGRPWRDPPVVKENFGSKGRPPLSSQTRRNNDSAWDDWDGEGNSGSSVDVRSKSTGDFRSLNGGGAPV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102335g00001 183 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Trme102335g00001 183 MobiDBLite consensus disorder prediction 116 183 - -
Trme102335g00001 183 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 180 IPR044519 GO:0005096|GO:0016192
Trme102335g00001 183 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Trme102335g00001 183 MobiDBLite consensus disorder prediction 160 174 - -
Trme102335g00001 183 SUPERFAMILY ArfGap/RecO-like zinc finger 4 112 IPR037278 -
Trme102335g00001 183 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Trme102335g00001 183 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Trme102335g00001 183 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Trme102335g00001 183 CDD ArfGap_ArfGap1 3 117 - -
Trme102335g00001 183 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Trme102335g00001 183 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Trme102335g00001 183 Pfam Putative GTPase activating protein for Arf 5 108 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102335g00001 Trme-Chr102335 133 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102335g00001 2 87 C2H2 Transcription Factor Family AT4G05330 45.977 5.15e-24 94.7