Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102263g00001 ATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCCGATAGTGCTATTGTCGAAAGGCTTGCAATAAAGTTGGAGCTTCGCAGTGTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTGGCCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCGCTATCGTCCTTGATGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTTTGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAG 426 0.4319 MHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAIKLELRSVEDLEVETVAVGNLVRERKGQQAESTQKIIGLLNRFKRVAGMEETAIVLDGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102263g00001 142 ProSiteProfiles U-box domain profile. 118 142 IPR003613 GO:0004842|GO:0016567
Trme102263g00001 142 Pfam U-box domain 119 141 IPR003613 GO:0004842|GO:0016567
Trme102263g00001 142 SUPERFAMILY RING/U-box 118 142 - -
Trme102263g00001 142 PANTHER U BOX DOMAIN-CONTAINING 6 142 - -
Trme102263g00001 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102263g00001 Trme-Chr102263 158 583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102263g00001 4 142 U-box Gene Family AT5G42340 59.712 8.94e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102263g00001 - - tpra:123891904 273.092