Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10224g00001 CAACCTAAAGAGCTAAAAGGTGGTTCTTTGTTTCCCCATCAGCTTGAGGCTCTGAACTGGTTGCGTAAATGCTGGTATAAGTCCAAGAATGTGATACTTGCTGATGAGATGGGGCTTGGGAAAACAATATCTGCTTGTGCTTTTATTTCATCTTTGTATTTTGAATTCAAAGTTTCACGTCCTTGTTTGGTCCTAGTACCTCTTGTCACAATGGGCAATTGGCTTGCTGAATTTTCACTATGGGCTCCAGATGTAAATGTTGTTCAATATCATGGCTGTGCAAAAGCAAGAGCCATAATTAGGCAGTATGAATGGCATGCAAGCGATCCAAGTGGATTGAATAAGAAAACAGAAGCCTATAAATTTAATGTGCTTTTGACTTCATATGAAATGGTTCTTGCCGATTATTCACATTTTCGGGTAGTTCCTTGGGAAGTTCTTGTTGTTGACGAGGGTCATCGACTGAAGAATTCAGAAAGTAAGCTGTTCAGCTTGCTAAATTCAATCTCTTTTCAACACCGTGTTCTGTTGACGGGCACCCCTCTCCAGAACAACCTTGGTGAGATGTACAACTTGCTTAATTTCTTACAGCCAGCATCATTTCCTTCCCTATCTTCATTTGAGGAGAGATTTAATGATCTTACAAGTGCAGAGAAAGTTGATGAATTGAAAAAACTAGTTTCTCCTCATATGCTTCGCAGACTTAAAAAGGATGCCATGCAAAATATTCCTCCCAAGACAGAAAGAATGGTTCCTGTTGAGTTGTCATCCATCCAAGCTGAATATTATCGTGCAATGCTTACAAAGAATTATCAAATATTGCGGAACATTGGGAAAGGTATTCCTCAGCAATCTATGCTGAACATTGTGATGCAACTGAGGAAGGTCTGCAATCATCCATATCTCATACCAGGAACTGAGCCTGACTCTGGATCTGTTGAGTTCCTTCATGAAATGAGAATAAAGGCTTCAGCTAAGTTGACTCTTCTGCATTCTATGCTAAAGATTTTGTATAGGGAAGGTCATAGAGTTCTTATTTTCTCACAAATGACAAAGCTTCTTGACATCCTGGAGGACTATTTGAATATCGAATTTGGGCCTAAAACATATGAGAGAGTGGATGGCTCTGTGTCTGTAGCAGATCGTCAGACAGCAATTGCACGCTTCAACCAAGACAAAAGTCGATTTGTTTTCTTACTATCCACCCGATCTTGTGGACTTGGGATAAATTTGGCCACTGCTGACACTGTCATCATCTATGATTCTGATTTCAACCCTCATGCAGATATCCAAGCAATGAATCGAGCACACAGAATTGGGCAATCAAATAGACTTTTAGTATACCGGCTTGTGGTTCGTGCCAGCGTTGAAGAGCGTATCTTGCAGCTTGCTAAAAAGAAATTGATGCTTGATCAGCTTTTTAAAGGTAAATCTGGATCTCAAAAAGAAGTAGAAGATATTTTAAAATGGGGAACTGAAGAACTCTTCAATGACTCTTGTGGACTGAATGGAAAAGATACAAGTGAGAATAATAATAGTAACAAAGATGAGGCAGTAGCAGATATAGAACATAAGCATCGGAAGAGGACTGGTGGTCTTGGTGACGTATACGAGGATAAGTGTACAGATAGCAGCAGCAAGATTTTGTGGGATGAAAATGCCATTTTAAAATTGCTTGATCGTTCAAACCTTCAAGATGCTTCAACTGATATT 1713 0.3958 QPKELKGGSLFPHQLEALNWLRKCWYKSKNVILADEMGLGKTISACAFISSLYFEFKVSRPCLVLVPLVTMGNWLAEFSLWAPDVNVVQYHGCAKARAIIRQYEWHASDPSGLNKKTEAYKFNVLLTSYEMVLADYSHFRVVPWEVLVVDEGHRLKNSESKLFSLLNSISFQHRVLLTGTPLQNNLGEMYNLLNFLQPASFPSLSSFEERFNDLTSAEKVDELKKLVSPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGIPQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKILYREGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVADRQTAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFKGKSGSQKEVEDILKWGTEELFNDSCGLNGKDTSENNNSNKDEAVADIEHKHRKRTGGLGDVYEDKCTDSSSKILWDENAILKLLDRSNLQDASTDI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10224g00001 571 Pfam Helicase conserved C-terminal domain 330 440 IPR001650 -
Trme10224g00001 571 SMART helicmild6 355 440 IPR001650 -
Trme10224g00001 571 FunFam chromodomain-helicase-DNA-binding protein 1-like isoform X1 244 471 - -
Trme10224g00001 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 234 IPR027417 -
Trme10224g00001 571 Pfam SNF2-related domain 28 303 IPR000330 GO:0005524|GO:0140658
Trme10224g00001 571 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 565 - -
Trme10224g00001 571 Gene3D - 244 471 IPR027417 -
Trme10224g00001 571 SMART ultradead3 6 210 IPR014001 -
Trme10224g00001 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 488 IPR001650 -
Trme10224g00001 571 MobiDBLite consensus disorder prediction 501 520 - -
Trme10224g00001 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 199 IPR014001 -
Trme10224g00001 571 Gene3D - 1 243 IPR038718 -
Trme10224g00001 571 CDD SF2_C_SNF 324 451 - -
Trme10224g00001 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 486 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10224g00001 Trme-Chr10224 1 1713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10224g00001 10 484 RAD5 or RAD16-like Gene Family AT1G02670 26.241 1.12e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme10224g00001 SNF2_N 2.1e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10224g00001 - - gmx:100793933 1077.39