Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10223g00001 AACAAAGCCCTATGTGGAAAACCTTTGAGCAATCCATGCAACACATCTCCAACCAAATCTATTGTGAATCCTAATTCAGCTCCTTCAACTCAAGGAAAGGSAAAAAAGCACAAAAAATTACTTATAGTGTTGATTGTAGTGTTGTTGGCTATGRTTATTTTAGCTTCAATGTTTGCACTTTTGTTTATCCAAAGCCGCCGGCGACGACGAAGTTTAGAACAAAGCCAACCCATATTAGGCCTACAATTGAATTCTCACAAGACTACTCCAAGTATCATAGAGACAAAATCCATTGATTTGGCTGGTGATTTTAGTAAAGGTGAAAATGGAGAATTGAATTTTGTTAGGGAAGACAAAGGTGGTTTTGATTTGCATGACTTGCTTAGGTCCTCAGCTGAAGTGCTTGGAAGTGGAAGTTTTGGATCAACTTATAAGGCTATGGTTTTGAATGGACCAATTGTGGTTGTGAAGAGATTTNNNNNNNNNNACAATGTTGGGAAACAAGAGTTTTTTGAACACATGAAAAAGCTTGGAAGTTTAAATCATCCTAATCTACTCCCTCTTGTTGCATTCTACTACAAAAAAGAAGAGAAGTTTTTGGTTTATGATTTTGGTGAAAATGGTAGCTTGGCTAGTCATCTACATGGTATGCAGCATTATATTTTATTTCTGGCTTAA 678 0.3584 NKALCGKPLSNPCNTSPTKSIVNPNSAPSTQGKXKKHKKLLIVLIVVLLAMXILASMFALLFIQSRRRRRSLEQSQPILGLQLNSHKTTPSIIETKSIDLAGDFSKGENGELNFVREDKGGFDLHDLLRSSAEVLGSGSFGSTYKAMVLNGPIVVVKRFXXXXNVGKQEFFEHMKKLGSLNHPNLLPLVAFYYKKEEKFLVYDFGENGSLASHLHGMQHYILFLA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10223g00001 225 MobiDBLite consensus disorder prediction 8 31 - -
Trme10223g00001 225 SUPERFAMILY Protein kinase-like (PK-like) 132 218 IPR011009 -
Trme10223g00001 225 ProSiteProfiles Protein kinase domain profile. 129 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10223g00001 225 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 216 IPR046959 -
Trme10223g00001 225 Gene3D Phosphorylase Kinase; domain 1 104 204 - -
Trme10223g00001 225 Pfam Protein kinase domain 132 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10223g00001 225 MobiDBLite consensus disorder prediction 5 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10223g00001 Trme-Chr10223 193 870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10223g00001 1 218 Receptor kinase-like Gene Family AT5G35390 39.834 6.44e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme10223g00001 Pkinase 2.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10223g00001 - - tpra:123893577 350.903