Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1022042g00001 ATGGATGTAGGCTGGTTTGATAAAACTGAGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAATGTTGGTTGGCGATGCACTTGGTTTGCTTGTTCAAGATATTTCTACAGTTATTACAGCCTTG 147 0.4218 MDVGWFDKTENSSGALGARLSTDAASIRMLVGDALGLLVQDISTVITAL 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1022042g00001 49 SUPERFAMILY ABC transporter transmembrane region 1 49 IPR036640 GO:0005524|GO:0016020
Trme1022042g00001 49 Pfam ABC transporter transmembrane region 1 48 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme1022042g00001 49 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 49 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme1022042g00001 49 Gene3D ABC transporter type 1, transmembrane domain 1 49 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1022042g00001 Trme-Chr1022042 19 165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1022042g00001 2 48 Calmodulin-binding Proteins AT2G36910 36.170 6.64e-08 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1022042g00001 K05658 - gmx:100777713 88.5817