Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1020499g00001 TTGCTTGAGCTTTTCAAGCCTATTGGTTATGTGCACAGTGCCAAGCTTGCTATTGATCATGAAACTAGCCTTGGTGGGGGATTTGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTCAGAAGGCTATTGAAGAACGCAATGGGTATGTGTATGGCCAGGACAAATGCACCATGAAAGTTGATTGGGTCACCCGAAGAACAGCCTTGTCACCAAGGAAGAT 221 0.457 MLELFKPIGYVHSAKLAIDHETSLGGGFGFVTFVTKEDAQKAIEERNGYVYGQDKCTMKVDWVTRRTALSPRK 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1020499g00001 73 Gene3D - 1 72 IPR012677 -
Trme1020499g00001 73 SUPERFAMILY RNA-binding domain, RBD 2 67 IPR035979 GO:0003676
Trme1020499g00001 73 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 55 IPR000504 GO:0003723
Trme1020499g00001 73 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 65 IPR000504 GO:0003723
Trme1020499g00001 73 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1020499g00001 Trme-Chr1020499 1 221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1020499g00001 1 71 Eukaryotic Initiation Factors Gene Family AT5G06000 49.296 1.34e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1020499g00001 - - tpra:123898674 80.8777