Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101882g00001 ATGGTGACATCACTCACGTATCACCTTCTGCGGGATATGAAACTGAACGTTAGGGAAATACATTCTCGAAAACCTCAGCTGTATCGAACCCGCGTATCAGATGAGTTTAAGGAATCCAAACAAATGATTCTTGTCTCCTCCGATGATGGAATAAGTTATCCTGGTGTCACATTAGTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGTCTAGGAAGAACAGGACGGGAAGGCAAAGAAGGAGAAGGCGTATTGTTGATTGCACCATGGGAAGAGTATTTTTTAAATAAGATCAAGGATCTCCCTCTAGAGAAATTCC 331 0.4199 MVTSLTYHLLRDMKLNVREIHSRKPQLYRTRVSDEFKESKQMILVSSDDGISYPGVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGVLLIAPWEEYFLNKIKDLPLEKF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101882g00001 110 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Trme101882g00001 110 PANTHER RNA HELICASE 5 102 - -
Trme101882g00001 110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 105 IPR027417 -
Trme101882g00001 110 Pfam Helicase conserved C-terminal domain 10 81 IPR001650 -
Trme101882g00001 110 Gene3D - 1 110 IPR027417 -
Trme101882g00001 110 SMART helicmild6 4 82 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101882g00001 Trme-Chr101882 1 619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101882g00001 10 107 Eukaryotic Initiation Factors Gene Family AT3G19760 30.275 6.04e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101882g00001 - - fve:101303232 181.03