Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1016g00001 AACGATTCCAAAGCTATTTGGAAAATAGCTGTTCGAGTTACAGATGCATGGGTCATTGGTAATTCCAAACTGAAACAACACATTCAAATGGTGGTTTGTGATGTCAAGGGTGATAAGGTTCACATCATAGCTCCAACTGAAGTTGCTAATCAGTTTAAAAATGAGTTAGTAGAGAACAATACTTTCACTTTGGAAAACTTTGAAGTTGAGAAAAATGAGGCTTCTATCAAGGTTTGTAATCANCCATTCAAGCTTATATTGAATGGGAGTACTTTACTTCAAGATCTGAACACGCTTGAGATACCAAATCCCGGATTCAAATTCTCAATGTTTGATGAAATTAACAACTCCAAGGTTCCTAAAGGTGTTTTAATAGATGTCATTGGTGCTTTTCATGAACTTGGGTATACCCAACTTGTGGGGGGAGGTAGCCGAAAGGTGCAAATTAACTTTAAAATGAAAGATCTTGCTGGAAATATATTGCCCTGCACGTTATGGGATCAGTTTGCCGAGAAGTTTGCCAAGTACAATAATGAAAGGCAAGATAGTGGACCTGTTATAATCCTCATACNTAACGCAATGATCAAAGAAGCTACAGAGAAATATGATCTTGGAGTTTCAAATGCTTGGAATTCTACTAAGTTATTCATCAATGAAGATTTACCTGAAATCCTCGAATTTAAAAAAAGCCTACCTACTGATGATACATCTTCCTCACAGTCCCTGTCTTTAACTCCTCATTCCTATATGTTGAGCCAAACTTCTTCAATGAGTCAATATGCTACGCAAAGTTTGTTTACAAAAGATGCTGTTGTTATGTCACTTCCTCAAATTCTAGAAACTCCTAATGTTAATGATGTGGTTTATGTTACTACTATTCGAACCTTGAAAGTCATCCCCACAAGAAGTGGTTGGTACTACAAATTATGCGCTTTATGTCCTAGATCAGCCAAAGGTGATACATTGCCAATAAAATGTAGTATAGGTCATCTCACTCATGCAATCAACCTTAGATACAAATTGGATGTTGAAGTTGAGTCAAGAGGCGCAAAATCCACATTTGTCTTTTGGGATCGTGAATGTAATGAATTGATTGGAAAAACTGCTGCTCAACTCCATCAAGAAATGGTTGAGGATGGTGTTACCAACCCACTTAGTTACCCTATGGATGTGGACAAAATTGAACGTCGGAATTTAGCAGTCAGGGTTAAGTGGCAACCACTTTGGAAATCATTTTCAGTGCAGGCAGTTAAGCAAGATGATGCTGTGTTTAACGACATTGAGAGTCAATTTCCAAAGGATGAGGAAACATCAAAGCTGTGCATCGAAGGAACCTCTACTGCTGCTGAAGGAACCTCTATTGTTGCCACGGATGCACAACCAATTCTCATTGCTCCAAATCCTGATTCAAAAGAAGTATCAAAAGATAGCGAATTTGTGGCTGAAACGCAAGATCTGTCAGCTTCTTCTGAACATATTCCAGAAGTTGTTGCCTTAACCCCTGGAAAAAGAATTGCTGGTGATTTCCTTGACCAAAACAATGATATCTCTCCTGCCCAACTATCCTCTACCAAAATGAAGAAAATAATTACCATCAAACTTGAAAAGAAGTGA 1614 0.3798 NDSKAIWKIAVRVTDAWVIGNSKLKQHIQMVVCDVKGDKVHIIAPTEVANQFKNELVENNTFTLENFEVEKNEASIKVCNXPFKLILNGSTLLQDLNTLEIPNPGFKFSMFDEINNSKVPKGVLIDVIGAFHELGYTQLVGGGSRKVQINFKMKDLAGNILPCTLWDQFAEKFAKYNNERQDSGPVIILIXNAMIKEATEKYDLGVSNAWNSTKLFINEDLPEILEFKKSLPTDDTSSSQSLSLTPHSYMLSQTSSMSQYATQSLFTKDAVVMSLPQILETPNVNDVVYVTTIRTLKVIPTRSGWYYKLCALCPRSAKGDTLPIKCSIGHLTHAINLRYKLDVEVESRGAKSTFVFWDRECNELIGKTAAQLHQEMVEDGVTNPLSYPMDVDKIERRNLAVRVKWQPLWKSFSVQAVKQDDAVFNDIESQFPKDEETSKLCIEGTSTAAEGTSIVATDAQPILIAPNPDSKEVSKDSEFVAETQDLSASSEHIPEVVALTPGKRIAGDFLDQNNDISPAQLSSTKMKKIITIKLEKK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1016g00001 537 Gene3D - 255 428 IPR012340 -
Trme1016g00001 537 Pfam Domain of unknown function DUF223 30 124 IPR003871 -
Trme1016g00001 537 CDD RPA1_DBD_B_like 126 232 - -
Trme1016g00001 537 Gene3D - 100 241 IPR012340 -
Trme1016g00001 537 SUPERFAMILY Nucleic acid-binding proteins 107 235 IPR012340 -
Trme1016g00001 537 SUPERFAMILY Nucleic acid-binding proteins 6 93 IPR012340 -
Trme1016g00001 537 Gene3D - 1 97 IPR012340 -
Trme1016g00001 537 CDD RPA1_DBD_A_like 8 91 - -
Trme1016g00001 537 SUPERFAMILY Nucleic acid-binding proteins 288 404 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1016g00001 Trme-Chr1016 3 2611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1016g00001 7 228 Core DNA Replication Machinery Family AT4G19130 22.458 2.99e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1016g00001 - - tpra:123891620 509.605