Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101666g00001 ATGTCATTCCGCAGCATAGTTCGTGATGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCAACATCATAGAGGAAAATCACATGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAGTTACTATTTGATGTCATTCGACGGCTAGAGGAGAGTGAGAATACATGGCCTTCACGAAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAATCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCTGAGTTCTGTGGCAAACTTACGTTTCCTGTGTCCCTGAAGCAG 351 0.4444 MSFRSIVRDVRDSFGSLSRRSFDVKLTGQHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQ 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101666g00001 117 CDD F-box_AtTLP-like 54 98 - -
Trme101666g00001 117 Gene3D - 49 102 - -
Trme101666g00001 117 Pfam F-box domain 54 101 IPR001810 GO:0005515
Trme101666g00001 117 FunFam Tubby-like F-box protein 49 102 - -
Trme101666g00001 117 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Trme101666g00001 117 PANTHER TUBBY-RELATED 27 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101666g00001 Trme-Chr101666 43 393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101666g00001 1 117 TUB Transcription Factor Family AT1G76900 73.333 1.79e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101666g00001 K19600 - gmx:100799279 226.868