Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10164g00001 ATGACCAATTCATTCAAGGATAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAGTTATTCAATGATTGTCCTGTGGCTGTAAAGATATTGAGTAGATCCAAAGGAAATGGTGAAGAATTTATTAATGAGATTTCAGACTTTGGACTTGCAAAGCTTTGCCTCAGAAAAGAGAGCATTATTTCAATGTCAGATGCAAGAGGAACAATGGGGCTTGAGCTTGGTAGTGATTTGAGACCTGATGGAATAATGGATACAGAAGAAGATGAGATTGCAAGGAGAATGATCATTGTGG 301 0.3821 MTNSFKDKLGQGGFGVVYKGKLFNDCPVAVKILSRSKGNGEEFINEISDFGLAKLCLRKESIISMSDARGTMGLELGSDLRPDGIMDTEEDEIARRMIIV 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10164g00001 100 Gene3D Phosphorylase Kinase; domain 1 2 67 - -
Trme10164g00001 100 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 47 IPR045874 GO:0004672
Trme10164g00001 100 ProSiteProfiles Protein kinase domain profile. 3 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10164g00001 100 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme10164g00001 100 SUPERFAMILY Protein kinase-like (PK-like) 5 66 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10164g00001 Trme-Chr10164 56 818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10164g00001 41 73 Receptor kinase-like Gene Family AT4G18250 72.727 7.88e-10 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme10164g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10164g00001 - - rcn:121050588 110.538