Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101642g00001 ACCTCATCAAAGGATACTAAGAATGATAGTGGTGATATTGAGTATGAATCAGATGATTCGGTTCAAGTGTTGGATCACTTTGAGCCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCGAAAATGTTGTATCCACATCAGCGGGAAGGATTAAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTGGCTGGACTGTTTTATTCACGTTTAATTAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAATTATCAGCTGTTGGTCTATCTGAGAAGACAAGAGAGTACGACTGCCATATTTTGGATCCTGTGCAAAACTCAGAGAATATGAACTTCAGTACATACTTCAG 461 0.41 TSSKDTKNDSGDIEYESDDSVQVLDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYDCHILDPVQNSENMNFSTYF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101642g00001 153 Gene3D - 31 147 IPR038718 -
Trme101642g00001 153 PANTHER SNF2/RAD54 FAMILY MEMBER 20 134 - -
Trme101642g00001 153 Pfam SNF2-related domain 70 123 IPR000330 GO:0005524|GO:0140658
Trme101642g00001 153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 125 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101642g00001 Trme-Chr101642 65 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101642g00001 54 136 RAD5 or RAD16-like Gene Family AT1G02670 34.444 5.04e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme101642g00001 SNF2_N 2.7e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101642g00001 K20093 - gmx:100781188 233.802