Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101570g00001 ATGAAGGCTGACATAAGTGCTCAAGTTGGTCCACTGCCACAGCTTGTAGTTGAGCCTACCGATGCACGGTCTAACTCATTTGTTGGAACGTACGAATATCTTGCTCCAGAGATCATCAAAGGCGAGGGACATGGGAATGCTGTAGATTGGTGGACTTTCGGTATACTTTTGTTTGAGCTTTTATACGGAAAAACTCCCTTCAAAGGTCCATCAAATGATGATACATTATCCAACATCGTGTCTCAGAGCCTTAAGTTTCCAGGTACTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAGAGGATTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCAATAAAAGGTGCTGCGGAAATTAAACAGCACCCTTTCTTTGTTAACCTCAACTGGGCTCTAATACGGTGTGCAGCACCACCGGAGCTCCCCAAGTTTCGAGATTTTGGAACTAGTGCTTCATCGATGGCTACACATAAGGAGAATGCAAATGATTTAGAGGATATAGATGATTGTGAAGAGTTTGAGCTGTTTTAG 537 0.4227 MKADISAQVGPLPQLVVEPTDARSNSFVGTYEYLAPEIIKGEGHGNAVDWWTFGILLFELLYGKTPFKGPSNDDTLSNIVSQSLKFPGTPIVSFHARDLIRGLLIKDPENRLGSIKGAAEIKQHPFFVNLNWALIRCAAPPELPKFRDFGTSASSMATHKENANDLEDIDDCEEFELF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101570g00001 178 SMART serkin_6 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101570g00001 178 Pfam Protein kinase domain 24 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101570g00001 178 Gene3D Transferase(Phosphotransferase) domain 1 20 145 - -
Trme101570g00001 178 SUPERFAMILY Protein kinase-like (PK-like) 21 150 IPR011009 -
Trme101570g00001 178 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101570g00001 178 PANTHER FLIPPASE KINASE 1-RELATED 12 148 - -
Trme101570g00001 178 FunFam serine/threonine-protein kinase D6PK-like 22 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101570g00001 Trme-Chr101570 107 643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101570g00001 2 178 AGC Kinase Gene Family AT5G03640 67.797 7.06e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme101570g00001 Pkinase 2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101570g00001 - - gmx:100789339 333.954