Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101488g00001 TCTCATCTTGGGTGGGGCCATTGGTTCACACTTAGAGATCTTGAACTTTCAACTAACCGTTTCGCTGCTGGGAATGTGATCGGTGAGGGTGGATATGGAGTTGTTTATAAGGGAAGGTTGATCAATGGATCTGAGGTTGCAGTTAAGAGACTTCTTAACAATCTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTCGACGCTATAGGCCACGTCAGACATAAACATCTGGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCATAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGTGCAATGAGACAACATGGAGTACTTACGTGGGAAGCTCGCATGAAAGTTATTCTAGGGACAGCGAAAGC 392 0.4388 SHLGWGHWFTLRDLELSTNRFAAGNVIGEGGYGVVYKGRLINGSEVAVKRLLNNLGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101488g00001 131 Gene3D Phosphorylase Kinase; domain 1 5 96 - -
Trme101488g00001 131 FunFam Putative receptor-like protein kinase 3 96 - -
Trme101488g00001 131 SUPERFAMILY Protein kinase-like (PK-like) 5 131 IPR011009 -
Trme101488g00001 131 Coils Coil 41 61 - -
Trme101488g00001 131 PANTHER OS01G0323000 PROTEIN 1 131 - -
Trme101488g00001 131 ProSiteProfiles Protein kinase domain profile. 21 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101488g00001 131 Pfam Protein tyrosine and serine/threonine kinase 24 130 IPR001245 GO:0004672|GO:0006468
Trme101488g00001 131 ProSitePatterns Protein kinases ATP-binding region signature. 27 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101488g00001 Trme-Chr101488 12 685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101488g00001 9 131 Trihelix Transcription Factor Family AT1G23540 47.967 2.44e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme101488g00001 PK_Tyr_Ser-Thr 8.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101488g00001 - - qsa:O6P43_021073 257.684