Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1013807g00001 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACAATCACCCTTGAAGTGGAGAGCTCTGATACCATTGACAATGTCAAGGCCAAGATTCAAGATAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGC 159 0.4465 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1013807g00001 53 Gene3D - 1 51 - -
Trme1013807g00001 53 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trme1013807g00001 53 FunFam Polyubiquitin-C 1 53 - -
Trme1013807g00001 53 PANTHER UBIQUITIN 1 53 - -
Trme1013807g00001 53 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme1013807g00001 53 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trme1013807g00001 53 SUPERFAMILY Ubiquitin-like 1 53 IPR029071 -
Trme1013807g00001 53 SMART ubq_7 1 52 IPR000626 GO:0005515
Trme1013807g00001 53 Pfam Ubiquitin family 3 52 IPR000626 GO:0005515
Trme1013807g00001 53 ProSiteProfiles Ubiquitin domain profile. 1 53 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1013807g00001 Trme-Chr1013807 1 159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1013807g00001 1 53 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.57e-33 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1013807g00001 - K08770 fve:101308059 106.301