Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10134g00001 ATGGTAATTCTGTGCAAAAATGTCGAGAAAACATTTCCGGCCGGTACAATTACTGTACATTGTTCATTAAGTGTGAGTGGCTTGGTTATGCTTAACTATGAACTCCTCATAAAGCGGAAGAATGGAATGAATGAAAGCCAAGGAGAATCACAAAAGTGGAGTAACAGCCCTGGATACACTAATGTAACGAATAGCCCCTTTAAGACTCCTTTGTCTGCAAAAGAGGGAAGGACACACAAGTCAAGGGTTTCCAAAGAAGGCAGATCATGTCCTCNAACACCCATCTCAAACGCTGGTTCCCCTTCTCCGCTTACTCCTGCTGGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGCATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATACGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATATCAAGAACAGAATACTTTGGAAAGGAATTGAATCTTCTACTCCTGGCAATGTGGATGGTGATATCAACATGCTTAAG 579 0.4145 MVILCKNVEKTFPAGTITVHCSLSVSGLVMLNYELLIKRKNGMNESQGESQKWSNSPGYTNVTNSPFKTPLSAKEGRTHKSRVSKEGRSCPXTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNIKNRILWKGIESSTPGNVDGDINMLK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10134g00001 193 MobiDBLite consensus disorder prediction 45 71 - -
Trme10134g00001 193 Coils Coil 127 147 - -
Trme10134g00001 193 Pfam E2F/DP family winged-helix DNA-binding domain 113 176 IPR003316 GO:0005667|GO:0006355
Trme10134g00001 193 MobiDBLite consensus disorder prediction 90 106 - -
Trme10134g00001 193 PANTHER TRANSCRIPTION FACTOR E2F 44 186 IPR015633 GO:0000978|GO:0006357
Trme10134g00001 193 SUPERFAMILY "Winged helix" DNA-binding domain 111 174 IPR036390 -
Trme10134g00001 193 Gene3D - 105 178 IPR036388 -
Trme10134g00001 193 MobiDBLite consensus disorder prediction 45 106 - -
Trme10134g00001 193 FunFam E2F transcription factor 1 105 178 - -
Trme10134g00001 193 SMART E2F_TDP_2 111 176 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10134g00001 Trme-Chr10134 106 1463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10134g00001 38 193 E2F-DP Transcription Factor Family AT2G36010 62.420 9.26e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trme10134g00001 E2F_TDP 5.3e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10134g00001 K06620 - gmx:100811762 265.003