Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101284g00001 ATGGAAGATAACAATACAACAAAATGGACACCTGAAGAGAACAAGCTATTTGAAAATGCTCTTGCAGTTCATGATAAGGATACACCGGATCGATGGCATAGAGTGGCGGAAATGATACCTGGAAAGACGGTCGGTGATGTGATGAAACAGTACAAGGAATTAGAAGATGATGTTTGTAATATTGAAGCTGGATTGATTCCAGTTCCTGGTTATAATACTCCTACTTCACCTTTTACCTTAGATTGGGTAAATAGTTCTGGTTATGATGGATTCAAAGGAAGTGGAAAGAGATCTCCTTTAGCTAGAGCAACTGAACATGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACACAAGTAA 363 0.3884 MEDNNTTKWTPEENKLFENALAVHDKDTPDRWHRVAEMIPGKTVGDVMKQYKELEDDVCNIEAGLIPVPGYNTPTSPFTLDWVNSSGYDGFKGSGKRSPLARATEHERKKGVPWTEEEHK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101284g00001 120 Pfam Myb-like DNA-binding domain 7 52 IPR001005 -
Trme101284g00001 120 MobiDBLite consensus disorder prediction 99 120 - -
Trme101284g00001 120 CDD SANT 8 54 IPR001005 -
Trme101284g00001 120 ProSiteProfiles Myb-like domain profile. 1 55 IPR001005 -
Trme101284g00001 120 ProSiteProfiles SANT domain profile. 7 57 IPR017884 -
Trme101284g00001 120 SUPERFAMILY Homeodomain-like 7 63 IPR009057 -
Trme101284g00001 120 MobiDBLite consensus disorder prediction 91 120 - -
Trme101284g00001 120 FunFam Transcription factor SRM1 1 68 - -
Trme101284g00001 120 Gene3D - 2 68 - -
Trme101284g00001 120 SMART sant 5 57 IPR001005 -
Trme101284g00001 120 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 120 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101284g00001 Trme-Chr101284 64 426 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme101284g00001 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101284g00001 - - gmx:778067 210.305