Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme101278g00001 | ATGGATGGTGCTAGAGACTCTGAAATAGCAATGGGAGCTTATCAACCCTATCATTTAGCTAATAGGCAGCCTGCAAGGGGTCAGATTCATGGTTTCCGCATGTCGCTGTGGTATGAGCACCTTGGCATGCTTCAGGAATCCTTCCTTCACCCAGAAAGTGAAGAATGCATTAGGAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCTAGCGAGTCACTTGAGCGTGACCTCCCCGGTCACCTTCTCCGCTATCCCATTGGGGTTTCTGGGGAAGGAAATGTGACAGAGCTGCCAGGATTTGAATTCTTCCCTGATACCAAGGCTCGTGTTCTTGGC | 345 | 0.4899 | MDGARDSEIAMGAYQPYHLANRQPARGQIHGFRMSLWYEHLGMLQESFLHPESEECIRKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVSGEGNVTELPGFEFFPDTKARVLG | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme101278g00001 | 115 | PANTHER | PHOSPHOLIPASE D | 1 | 115 | IPR015679 | - | |
| Trme101278g00001 | 115 | Pfam | Phospholipase D C terminal | 46 | 115 | IPR024632 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme101278g00001 | Trme-Chr101278 | 1 | 345 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme101278g00001 | 1 | 115 | Phospholipase D Gene Family (Wang group) | AT1G52570 | 84.348 | 1.20e-67 | 215 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme101278g00001 | K01115 | - | ini:109165505 | 228.024 |