Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101214g00001 GAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGGTCCCCCGCCGTTGTGATTGGCTACCTGATGAAGTCTAGAGGATGGAGACTTGCACAGAGTTATCAGTGGGTAAAGGAACGTAGAACTTCCGTTGAATTATCTGAAGGTGCCTACCAGCAACTACAGGAGTACGAGCAAAAGCTATTTGGATCAGTCGGCAACTCGATACTCTCTTCTGGTTTCTCACCTGCAGCAGGACCATCTTCAATT 261 0.4751 EKDKERVLVHCMSGKSRSPAVVIGYLMKSRGWRLAQSYQWVKERRTSVELSEGAYQQLQEYEQKLFGSVGNSILSSGFSPAAGPSSI 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101214g00001 87 Gene3D Protein tyrosine phosphatase superfamily 1 68 IPR029021 -
Trme101214g00001 87 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1 56 IPR000387 GO:0016311|GO:0016791
Trme101214g00001 87 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 65 IPR029021 -
Trme101214g00001 87 ProSitePatterns Tyrosine specific protein phosphatases active site. 9 19 IPR016130 GO:0016311|GO:0016791
Trme101214g00001 87 Pfam Dual specificity phosphatase, catalytic domain 2 64 IPR000340 GO:0008138|GO:0016311
Trme101214g00001 87 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 81 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Trme101214g00001 87 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 67 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101214g00001 Trme-Chr101214 2 687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101214g00001 1 51 Protein tyrosine phosphatase (PTP) family AT2G04550 76.471 9.09e-25 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101214g00001 K04459 - jre:109012657 129.028