Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1011g00001 ATGTATCGCGAAGGACCAGAGGGAACTCCCTATCATACAATGATAATTGAAGGCTATGTAGATGCACCTGTTGATGTTTCTTTATGCCTCACATGGGAGTCACCCCTTTATAAGAAATGGTGGCCTCAGTTTATTGTTCCGACTTTCAAAGTTACGGCGTCTGATTGTTTGCAGAAGGTCAAAACTGGAGAACAGATAGCACTAGCTCAGAAGTCAAAGGCCTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAATAAGAGAGGGAAAGACCGATTACAGAGCCAGGATTCGTTTGATTAATCAGGACAAAAACAAGTACAACACTCCAAAATACCGTTTCGTTGTCCGATTCACAAACAAGGACATTGTTGCTCAAATTGTCTCTGCTAGCATCGCCGGTGATATTGTTCTTGCCGCAGCTTATGCACACGAGCTTCCTCAATTTGGACTTGAAGTAGGCCTTACCAACTATGCTGCAGCCTATTGCACTGGTCTCCTTTTGGCTCGCAGAGTTCTTAAAACTCTTGAAATGGATGAGGAGTATGAGGGCAATGTAGAGGCTACCGAAGAGGATTATTCAGTTGAACCAGGTGAGTCCAGAAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTTGTTAAGACCACAACCGGCAACCGTGTATTTGGTGCACTCAAGGGAGCTTTGGATATTCCTCATAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAAAAGGAGCTTGATGCTGAG 753 0.4422 MYREGPEGTPYHTMIIEGYVDAPVDVSLCLTWESPLYKKWWPQFIVPTFKVTASDCLQKVKTGEQIALAQKSKAYFKRYQVKFKRIREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVLAAAYAHELPQFGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATEEDYSVEPGESRRPFRALLDVGLVKTTTGNRVFGALKGALDIPHSDKRFAGFDKEKKELDAE 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1011g00001 251 SUPERFAMILY Translational machinery components 74 243 - -
Trme1011g00001 251 CDD Ribosomal_L18_L5e 104 230 - -
Trme1011g00001 251 Gene3D - 66 251 - -
Trme1011g00001 251 PANTHER RIBOSOMAL PROTEIN L5-RELATED 69 251 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme1011g00001 251 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 77 231 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme1011g00001 251 PRINTS Ribosomal protein L5 signature 207 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme1011g00001 251 PRINTS Ribosomal protein L5 signature 83 102 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme1011g00001 251 PRINTS Ribosomal protein L5 signature 147 167 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trme1011g00001 251 PRINTS Ribosomal protein L5 signature 106 125 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1011g00001 Trme-Chr1011 234 2266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1011g00001 69 251 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 86.631 8.31e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1011g00001 K02932 - gmx:100818819 343.584