Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101190g00001 ATGAAGATAGCTCTTGATTCTGCTAAGGGACTTGCATTTCTTCACAGTGATGAAGTCGAAGTGATATATCGAGACTTCAAAACTTCTAATATCTTGATTGATTCGGACTATAATGCAAAACTCTCTGATTTTGGGATGGCGAAAGATGGACCGGAAGGTGGTAAGAGCCATGTGTCTACAAGGGTAATGGGCACCCCAGGCTATGCAGCACCGGAGTATCTAGCCACAGGTCACCTAACCAAAAAGAGCGATGTATACAGTTTCGGAGTCGTTCTTTTAGAAATTATGTCCGGCAAACGTGTATTGGATAAAAACAGGCCAACTAAGGAGCATAATTTAGTTGAATGGGCGAAACCATTACTCATCAGTAAACGCAAAATCTTTCAAGTCATGGATGCTCGTATAGAAG 409 0.4181 MKIALDSAKGLAFLHSDEVEVIYRDFKTSNILIDSDYNAKLSDFGMAKDGPEGGKSHVSTRVMGTPGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRVLDKNRPTKEHNLVEWAKPLLISKRKIFQVMDARIE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101190g00001 136 PANTHER OS01G0588500 PROTEIN-RELATED 1 136 - -
Trme101190g00001 136 SMART serkin_6 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101190g00001 136 SUPERFAMILY Protein kinase-like (PK-like) 2 122 IPR011009 -
Trme101190g00001 136 Gene3D Transferase(Phosphotransferase) domain 1 1 136 - -
Trme101190g00001 136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
Trme101190g00001 136 ProSiteProfiles Protein kinase domain profile. 1 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101190g00001 136 Pfam Protein kinase domain 3 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101190g00001 Trme-Chr101190 17 646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101190g00001 1 136 Receptor kinase-like Gene Family AT4G02010 56.204 4.11e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme101190g00001 Pkinase 6.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101190g00001 - - vum:124824934 238.424