Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101161g00001 AATTTGCTTGGTGAGGGAGGCTATGCTGAGGTTTACTTAGGTAAATTGGAAGATGGAAACTTTGTTGCTATTAAAAAGTTGACAAAAGGTAGCCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCATCCATACTTTATGGTATGTTTCGTATTTGGATTGACTTATTTGAGCTTATCCAGTAA 294 0.3741 NLLGEGGYAEVYLGKLEDGNFVAIKKLTKGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGMFRIWIDLFELIQ 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101161g00001 97 PANTHER OS08G0249100 PROTEIN 1 84 IPR046958 -
Trme101161g00001 97 Gene3D Transferase(Phosphotransferase) domain 1 1 87 - -
Trme101161g00001 97 Pfam Protein tyrosine and serine/threonine kinase 2 82 IPR001245 GO:0004672|GO:0006468
Trme101161g00001 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme101161g00001 97 SUPERFAMILY Protein kinase-like (PK-like) 1 85 IPR011009 -
Trme101161g00001 97 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101161g00001 Trme-Chr101161 227 520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101161g00001 1 84 Receptor kinase-like Gene Family AT1G53420 43.529 3.92e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme101161g00001 PK_Tyr_Ser-Thr 7.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101161g00001 - - gmx:100776081 164.466