Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme101028g00001 AATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAGCGAATTCGTTCATTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACCGACGCTTCAACCGTGAAAAGTCTTGTTGGTGACACATTGGCCCTCATTGTGCAGAACATATCAACAATCACAGCTGGTCTAATTATAGCATTCACTGCTAATTGGATTCTCGCTTTTATAGTATTGGCTGTGTCACCTATGGTTCTTATGCAAGGAATGGTTCAGATGAAGTTTCTTAAAGGATTTAGTGCCGACGCCAAGGTGATGTATGAAGAGGCAAGCCAGGTAGCAACTGATGCTGTTAGTAGTATCAGAACTGTTGCATCATTTTGTGCAGAATCAAAAGTTATGGA 434 0.4032 NYFFGIAGGKLIERIRSLTFEKIVHQEIRWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLIIAFTANWILAFIVLAVSPMVLMQGMVQMKFLKGFSADAKVMYEEASQVATDAVSSIRTVASFCAESKVM 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme101028g00001 144 Pfam ABC transporter transmembrane region 1 143 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme101028g00001 144 Gene3D ABC transporter type 1, transmembrane domain 1 144 IPR036640 GO:0005524|GO:0016020
Trme101028g00001 144 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 144 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme101028g00001 144 SUPERFAMILY ABC transporter transmembrane region 1 142 IPR036640 GO:0005524|GO:0016020
Trme101028g00001 144 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 144 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme101028g00001 Trme-Chr101028 1 629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme101028g00001 3 144 Calmodulin-binding Proteins AT2G36910 34.507 2.77e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme101028g00001 K05658 - ccaj:109794544 258.455