Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100919g00001 ATGGTTGATCCTGTTAGCCTCTGCACAGGTACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTACGATGGAAACAGTACAGATCCAGATACAAATGAGGTTCTTGAAGATCTTAGTTTGAGGTCTAATATTCCACTAAGACAATCAATCGAAGAGTGGAGAGAACTTAATTATTGTCTTCTGATAAGGTCTATCAGGGAAAATTTGTTGTTAAATTCTAATCTACAAGAGTCCCTAAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGACTGGATCTCTATCGGAGAGCTTACTGATATTGTTATATCGATCCTTGGGAACTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGATGCTGTAGAAGGGCATGCAAGAAACAAG 411 0.382 MVDPVSLCTGTTCERSAIEGWFYDGNSTDPDTNEVLEDLSLRSNIPLRQSIEEWRELNYCLLIRSIRENLLLNSNLQESLSQMQALIAENSINKDWISIGELTDIVISILGNSNDREVKMKILITLKDAVEGHARNK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100919g00001 137 SUPERFAMILY RING/U-box 1 58 - -
Trme100919g00001 137 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Trme100919g00001 137 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Trme100919g00001 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
Trme100919g00001 137 Pfam U-box domain 1 56 IPR003613 GO:0004842|GO:0016567
Trme100919g00001 137 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100919g00001 Trme-Chr100919 148 558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100919g00001 1 137 U-box Gene Family AT1G20780 30.345 5.71e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100919g00001 - - gmx:100783638 231.106