Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100910g00001 ATGGAATACCTTCATTCTCAAGGTGTGATTCATAGAGATCTCAAATCAAATAACTTGCTTCTCAATGATGAGATGAGAGTTAAGGTGGCAGATTTCGGTACATCGTGTCTTGAAACGCGATGCCGAGAAACAAAAGGAAACATGGGAACTTATCGTTGGATGGCGCCTGAGATGATTAAGGAAAAACCGTATACTCGTAAAGTTGATGTGTATAGTTTTGGAATTGTGCTTTGGGAACTCACAACTGCTTTGCTTCCTTTTCAAGGAATGACTCCAGTACAAGCTGCTTTTGCAGTTGCTGAGAAGGTCAGAGCCTATTTCTAA 324 0.4074 MEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKVRAYF 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100910g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100910g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 1 102 IPR011009 -
Trme100910g00001 107 SMART serkin_6 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100910g00001 107 Pfam Protein kinase domain 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100910g00001 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Trme100910g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 107 - -
Trme100910g00001 107 PANTHER SERINE-THREONINE PROTEIN KINASE 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100910g00001 Trme-Chr100910 340 663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100910g00001 1 102 MAP Kinase Kinase Kinase AT1G62400 98.039 2.06e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme100910g00001 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100910g00001 - - lja:Lj2g3v2878340.1 218.394