Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100878g00001 ATGATCATCCATTATCTAATGCGCACAATGTCAATGTCTGTTACTCAGGCAATGAAAATATTTTCTGATGCACGTCCTCCGGGAATCTATAAACCTGAGTATATTGATTCATTATATAAATTCTATCATGAAAAGAAGCCTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAGGACTCCCCAACTGGTGGATCTCAATGGTGAAGCAGCTCCAGATGACGACGACGACGATGATGGAGTACCAGGTCCTCCGTTGCACGTATGGATCTTATAG 279 0.4229 MIIHYLMRTMSMSVTQAMKIFSDARPPGIYKPEYIDSLYKFYHEKKPEMIVCPPTPEWKRTPQLVDLNGEAAPDDDDDDDGVPGPPLHVWIL 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100878g00001 92 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 59 IPR029021 -
Trme100878g00001 92 PANTHER MRNA-CAPPING ENZYME 1 68 - -
Trme100878g00001 92 Gene3D Protein tyrosine phosphatase superfamily 1 81 IPR029021 -
Trme100878g00001 92 MobiDBLite consensus disorder prediction 67 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100878g00001 Trme-Chr100878 35 403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100878g00001 1 85 Protein tyrosine phosphatase (PTP) family AT3G09100 72.941 3.73e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100878g00001 K13917 - gmx:100818110 167.548