Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10084g00001 ATGCAAACAGGCGAAAGACAAACGGCTCGGTTAAGGTTAAAATATTTGGAGTCAGTACTAAAGAAGGATATCAATTTCTTTGACAATGAAGCCAGGGATGCCAATATCATTTTCCACATTTCTAGTGATGCAATTTTGGTACAAGATGCAATTGGTGACAAGACCGGGCATGCAATGCGTTACCTTTCTCAATTCATAGCTGGATTTGGCATTGGATTTACATCAGTATGGCAGCTTACACTACTCACCTTGGCTGTTGTTCCATTCATAGCTATAGCGGGCGGAGCTTACACAACAATTATGTCTACTTTATCAGAAAAAGGTGAAGCAGCTTATGCCGAAGCAGGGAAGGTTGCAGAAGAGGTAATTTCTCAAGTGCGTACAGTTTACTCATTTGTTGGAGAAGAAAAAGCTGTTGGTTCATACTCAAAGTCACTTGATAAGGCTTTGAAGCTTGGAAAGAAGAGTGGTTTTGCAAAAGGAATTGGAGTTGGCTTTACATATGGGCTTTTATTCTGTGCTTGGGCGTTGCTTCTTTGTGCCCTTGGTCAAGCTGCTCCAAACCTTGGTTCGATTGCTAAAGGCCGTGCAGCTGCAGCCAATATCATGAACATGATTGCATCCGTTTCAGACTCATCTAAAAGGTTGGATGAAGGCACTGTTTTGCCACAAGTAGCAGGGAAAATTGATTTTTTGAATGCTGGGAAGACTGTAGCAGTTGTTGGTCCAAGTGGTTCTGGAAAGAGCACAATTATTTCCCTTATTCAAAGGTTCTATGACCCCACTTCAG 790 0.4203 MQTGERQTARLRLKYLESVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAMRYLSQFIAGFGIGFTSVWQLTLLTLAVVPFIAIAGGAYTTIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVGSYSKSLDKALKLGKKSGFAKGIGVGFTYGLLFCAWALLLCALGQAAPNLGSIAKGRAAAANIMNMIASVSDSSKRLDEGTVLPQVAGKIDFLNAGKTVAVVGPSGSGKSTIISLIQRFYDPTS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10084g00001 263 SUPERFAMILY ABC transporter transmembrane region 3 206 IPR036640 GO:0005524|GO:0016020
Trme10084g00001 263 Gene3D ABC transporter type 1, transmembrane domain 1 259 IPR036640 GO:0005524|GO:0016020
Trme10084g00001 263 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 202 - -
Trme10084g00001 263 Pfam ABC transporter 232 262 IPR003439 GO:0005524
Trme10084g00001 263 Pfam ABC transporter transmembrane region 2 180 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme10084g00001 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 263 IPR027417 -
Trme10084g00001 263 PANTHER ABC TRANSPORTER B FAMILY 233 263 IPR039421 -
Trme10084g00001 263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 179 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10084g00001 Trme-Chr10084 21 1496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10084g00001 1 263 Calmodulin-binding Proteins AT2G36910 42.173 2.72e-74 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10084g00001 K05658 - gmx:100787093 429.098