Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10082g00001 ATGAGGCATCACTGTCCAATTTGTTATGAGTACCTTTTTGACTCGTTGAAAGACACCACTGTTATGAAATGTGGTCACACAATGCATTGTGAATGCTACCATGAGATGGTAAAGCGTGACAAGTACTGTTGTCCTATATGTTCCAAGTCGGTGATTGACATGTCTATGACATGGAAGAGAATCGATGAAGAGATTGAAGCAACTGCCATGCCTGATGATTATCGGAATAGAAAGGTCTGGATACTTTGTAATGACTGCAATGATACAACCGAAGTTCACTTCCACATTATTGGGCATAAATGCGGTCACTGCAATTCATATAACACCCGTGCTATTGCTCCTCCTGTTCTTCCGCAATAA 360 0.4111 MRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMVKRDKYCCPICSKSVIDMSMTWKRIDEEIEATAMPDDYRNRKVWILCNDCNDTTEVHFHIIGHKCGHCNSYNTRAIAPPVLPQ 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10082g00001 119 ProSiteProfiles Zinc finger RING-type profile. 5 48 IPR001841 -
Trme10082g00001 119 FunFam RING finger and CHY zinc finger domain-containing protein 1 76 118 - -
Trme10082g00001 119 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 116 - -
Trme10082g00001 119 SMART ring_2 5 47 IPR001841 -
Trme10082g00001 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Trme10082g00001 119 Gene3D - 79 114 - -
Trme10082g00001 119 Pfam Zinc finger, C3HC4 type (RING finger) 5 47 IPR018957 GO:0046872
Trme10082g00001 119 SUPERFAMILY RING/U-box 4 56 - -
Trme10082g00001 119 Pfam Zinc-ribbon 52 110 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10082g00001 Trme-Chr10082 155 1642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10082g00001 1 118 C2H2 Transcription Factor Family AT3G18290 41.525 1.02e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10082g00001 K10144 - sind:105171477 251.521