Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100742g00001 ATGAGGATGAAAATTGCTCTTGACACAGCAAGAGCTTTAAAATATCTGCATGAGCACTGTTACCCTTCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGGTTTCTGATTTTGGTCTTGCAATAACTGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACATTGGGGTATGTAGCCCCAGAGTATCTTTTAGATGGGTGGGGTTGA 243 0.3951 MRMKIALDTARALKYLHEHCYPSVIHRDLKSSNILLDANFNAKVSDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGWG 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100742g00001 80 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Trme100742g00001 80 Gene3D Transferase(Phosphotransferase) domain 1 1 79 - -
Trme100742g00001 80 Pfam Protein kinase domain 4 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100742g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 2 78 IPR011009 -
Trme100742g00001 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100742g00001 80 PANTHER OS01G0750732 PROTEIN 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100742g00001 Trme-Chr100742 57 678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100742g00001 2 78 Receptor kinase-like Gene Family AT4G02010 63.291 9.96e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Trme100742g00001 Pkinase 2.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100742g00001 - - vra:106764755 149.058