Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1007315g00001 ATGGCGCCGGAATTTCAAGTAACCGGCGTTGCGACGCAGATGACGGACGTGTACGCTTTTGGCGTGGTGGTTTTGGAGCTTCTGAGCGGTTTAGAAGCTGTGAGATTTGAATTGGAGGGTAATGACGGCGGGTATAGGAGG 141 0.5319 MAPEFQVTGVATQMTDVYAFGVVVLELLSGLEAVRFELEGNDGGYRR 47
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1007315g00001 47 Gene3D Transferase(Phosphotransferase) domain 1 1 43 - -
Trme1007315g00001 47 PANTHER OS09G0572100 PROTEIN 1 47 - -
Trme1007315g00001 47 SUPERFAMILY Protein kinase-like (PK-like) 1 31 IPR011009 -
Trme1007315g00001 47 ProSiteProfiles Protein kinase domain profile. 1 47 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1007315g00001 Trme-Chr1007315 16 156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1007315g00001 1 47 Receptor kinase-like Gene Family AT1G51940 50.000 6.98e-09 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme1007315g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1007315g00001 - - mtr:11414164 80.4925