Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10071g00001 TCTTTAAAAAACAGTAGATATGACTCTGAGCCTATGTTTCGCTCTTTTGGAATTACTATTGAACCTTGTTTTACTCAAGTCGATGGTCGTGTTTTGCAAGCTCCAACGCTTGTTGTCGGAAGCGGGCATAACCTTTGTCCCCGAAATGGGAGCTGGAATTTGAATGATAAGAAACTAGTTGAACCTGTGGAGATTAAGCGTTGGGCCATTGTAAACTTTTCATCGCGGTGTGCTATAAAACATTTGGGCAGTTTGATTAAAAAATGCTCTGAAATGAAAGGGATGCTCATACATCGTCCGTTCGATGTATTTGAAGAGGATAGTCGCTATAGAAGTGAATNGCCATCTTCTAGGGTTGCTAGAATGTATGAAAAGTTAAAGGCCAAGATGCCTGGACCCCCTAAGGATCCTCCGGCTCAACTTCTTTTGTGTATCCTTCCGGTTAAGAATTGTGAGCTTTATGGTAGGATTCAACAAACTTCAATGAAATGGATCATTTTTCGTTACTTTTTTCACTATTAG 522 0.4004 SLKNSRYDSEPMFRSFGITIEPCFTQVDGRVLQAPTLVVGSGHNLCPRNGSWNLNDKKLVEPVEIKRWAIVNFSSRCAIKHLGSLIKKCSEMKGMLIHRPFDVFEEDSRYRSEXPSSRVARMYEKLKAKMPGPPKDPPAQLLLCILPVKNCELYGRIQQTSMKWIIFRYFFHY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10071g00001 173 Gene3D - 31 164 - -
Trme10071g00001 173 SUPERFAMILY Ribonuclease H-like 27 162 IPR012337 -
Trme10071g00001 173 Pfam Argonaute linker 2 domain 3 38 IPR032472 -
Trme10071g00001 173 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 160 - -
Trme10071g00001 173 Pfam Mid domain of argonaute 47 80 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10071g00001 Trme-Chr10071 734 1498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10071g00001 1 165 Eukaryotic Initiation Factors Gene Family AT5G43810 29.775 2.91e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10071g00001 K11593 - pop:7486850 177.563