Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100683g00001 ATGCCAAATGGTAGCCTTGATTATCATTTATATGGAAAAAGGACACCTCTCGCTTGGAGTGTAAGGCACAAAATAGCTCTTGGTTTGGCCTCTGGTGTGCTTTATTTACATGAAGAATGGGAGAGATGTGTGGTACATAGGGATATCAAATCAAGCAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGTGACTTTGGATTGGCTAAACTAATGGACCACGAACTCGGGCCCCAAACAACTGGGCTAGCTGGAACATTGGGATATCTAGCTCCAGAATATATGAGTACAGGCAGGGCCAGCAAAGAGNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGTGTTTGATGATTGTTGGATTATGGTGTGCTCACCCTGATGCAAATCTTAGACCGTCGATTAGACAAGCAATTCAAGTGCTTAATTTTGAAGTTGCCTTGCCAAATCTTCCATCAAAGAGGCCTGTTGCAACCTATCATGCTCCTACACCGTCTGTTAGCTCAGTTGAAGCTTTCATAACCACAAGCCTTCAAGATGGTCGTTAA 558 0.3961 MPNGSLDYHLYGKRTPLAWSVRHKIALGLASGVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTLGYLAPEYMSTGRASKEXXXXXXXXXXXXXXCLMIVGLWCAHPDANLRPSIRQAIQVLNFEVALPNLPSKRPVATYHAPTPSVSSVEAFITTSLQDGR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100683g00001 185 Pfam Protein kinase domain 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100683g00001 185 SUPERFAMILY Protein kinase-like (PK-like) 1 172 IPR011009 -
Trme100683g00001 185 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Trme100683g00001 185 PANTHER - 118 147 - -
Trme100683g00001 185 FunFam Lectin-domain containing receptor kinase A4.3 1 107 - -
Trme100683g00001 185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme100683g00001 185 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100683g00001 185 SMART serkin_6 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100683g00001 Trme-Chr100683 79 636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100683g00001 119 164 Receptor kinase-like Gene Family AT5G10530 78.261 2.56e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme100683g00001 Pkinase 8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100683g00001 - - nnu:104595546 252.677