Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10054g00001 TTATTAAGGGCTTCTGCTGAGGTACTTGGTAAGGGAACATTTGGTGCTGCATACAAGGCAGTGCTAGAGGATGCAACCACAGTTGTCGTCAAGAGGCTAAAAGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAACATATGGATATTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTAAAGGCATATTACTATTCCAAAGATGAGAAACTTGTTGTATATGACTACTACAGTCAGGGTAGCATCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAAGGTGGCTTTAGATTGGAATACTCGGATCAAAATAGCATTAGGTGCTGCACGAGGCCTTGCTCGTATCCATTCTGAGAACGGTGGGAAACTTGTACACGGCAATGTCAAATCCTCAAATATCTTTCTCAACACTAAACAGTACGGTTGTGTATCTGATCTTGGCCTGGCAACCATAATGAGCTCAGTCACCCAGCCCATCTCGCGAGCAGCCGGTTATCGAGCACCTGAAGTTACAGACACCAGGAAAGCAACACAGGCTTCAGATGTTTACAGCTTTGGCGTGGTGTTACTAGAGCTTCTAACTGGGAAATCCCCTATCCACACAACTAGAGGCGATGAGATTGTCCACCTTGTGAGATGGGTTCATTCAGTTGTGAGAGAGGAGTGGACTGCTGAAGTATTCGACATAGAGCTTATGAGATGTCCTAATATAGAAGAAGAGATGGTAGAGATGTTACAGATAGCCATGTCATGTGTTGTAAGGATGCGTGATCAAAGACCTGCGATGTCAGAAATCGTAAAGATGATAGAAAATGTAAGGCGGATCGATATAGAGAATCAGCCATCATCTGAGAACCAAGCTGAAAATGCAACACAGCATAAAATCTCTCAACTTGATAGTCCACTCTCTACCCAAGAAGGAGGTGAATGA 936 0.437 LLRASAEVLGKGTFGAAYKAVLEDATTVVVKRLKEVAVGKKDFEQHMDIVGSLKHENVVELKAYYYSKDEKLVVYDYYSQGSISALLHGKRGEDKVALDWNTRIKIALGAARGLARIHSENGGKLVHGNVKSSNIFLNTKQYGCVSDLGLATIMSSVTQPISRAAGYRAPEVTDTRKATQASDVYSFGVVLLELLTGKSPIHTTRGDEIVHLVRWVHSVVREEWTAEVFDIELMRCPNIEEEMVEMLQIAMSCVVRMRDQRPAMSEIVKMIENVRRIDIENQPSSENQAENATQHKISQLDSPLSTQEGGE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10054g00001 311 FunFam pollen receptor-like kinase 1 1 77 - -
Trme10054g00001 311 Gene3D Transferase(Phosphotransferase) domain 1 79 300 - -
Trme10054g00001 311 ProSitePatterns Protein kinases ATP-binding region signature. 9 40 IPR017441 GO:0005524
Trme10054g00001 311 ProSiteProfiles Protein kinase domain profile. 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10054g00001 311 PIRSF ILK 3 284 - -
Trme10054g00001 311 SUPERFAMILY Protein kinase-like (PK-like) 7 283 IPR011009 -
Trme10054g00001 311 MobiDBLite consensus disorder prediction 282 311 - -
Trme10054g00001 311 Pfam Protein kinase domain 6 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10054g00001 311 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 78 286 - -
Trme10054g00001 311 PANTHER OS05G0588300 PROTEIN 1 285 - -
Trme10054g00001 311 Gene3D Phosphorylase Kinase; domain 1 4 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10054g00001 Trme-Chr10054 2 1326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10054g00001 1 292 Receptor kinase-like Gene Family AT4G23740 75.510 5.12e-167 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme10054g00001 Pkinase 3.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10054g00001 - - gmx:100804799 509.22