Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100529g00001 GGTTCAGGTGGTTTCGGTGACGTGTATAAAGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAGCTGATACATGTAAGTGGACAAGGGGACAGAGAATTCACAGCTGAAATGGAAACCATTGGAAAAATCAAGCACAGAAACCTTGTTCCTCTTCTGGGATACTGCAAAGTTGGAGAGGAAAGACTGTTGGTTTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTCCACGACCCGAAGAAAGCTGGAATCAAGATGAATTGGTCAGTGAGGAGGAAGATTGCAATTGGGGCTGCAAGGGGATTGGCTTTTCTTCATCATAGTTGTATCCCCCATATCATTCACAGGGACATGAAATCAAGCAATGTGTTGCTTGATGAAAATTTGGAAGCAAGGGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTATGGACACACATTTGAGTGTAAGCACATTGGCGGGCACGCCCGGTTATGTTCCTCCAGAATACTATCAGAGCTTTAGATGCTCCACTAAAGGTGATGTTTATAGTTATGGTGTAGTTTTGCTGGAGTTGCTGACAGGGAGAAGACCAACGGATTCAGCTGATTTTGGCGATAACAATCTTGTTGGATGGGTTAAACAACATGCCAAACTTAAAATAAGTGATGTTTTTGATCAAGAGCTTATGAAA 687 0.4265 GSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKMNWSVRRKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKLKISDVFDQELMK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100529g00001 229 CDD STKc_IRAK 1 227 - -
Trme100529g00001 229 Pfam Protein tyrosine and serine/threonine kinase 1 227 IPR001245 GO:0004672|GO:0006468
Trme100529g00001 229 SUPERFAMILY Protein kinase-like (PK-like) 1 223 IPR011009 -
Trme100529g00001 229 SMART serkin_6 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100529g00001 229 Gene3D Transferase(Phosphotransferase) domain 1 71 229 - -
Trme100529g00001 229 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 70 229 - -
Trme100529g00001 229 Gene3D Phosphorylase Kinase; domain 1 1 70 - -
Trme100529g00001 229 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Trme100529g00001 229 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100529g00001 229 FunFam serine/threonine-protein kinase BRI1-like 2 1 69 - -
Trme100529g00001 229 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100529g00001 Trme-Chr100529 3 689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100529g00001 1 229 Receptor kinase-like Gene Family AT4G39400 93.450 2.44e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme100529g00001 PK_Tyr_Ser-Thr 7.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100529g00001 K13415 - pvu:PHAVU_009G1385000 457.603