Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100492g00001 ATGCAGGCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACAGGTGTTATTGCCTCTTTGCTGAGTTCTCAGATTCCTGAAAGGTTGTTACCGGCAAGTCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTGTGCTGTTGAAGAAAGTGCAGCTGATAGAAGTTTTGCGTCTGCACATCTGGAGCGCGCCTCCAGAAGTATGAACCAACAACGGTCCTGTAATAAAAGCGAGAAACCAATTGATGTGTTGCGAAAAGTTATTGGCAATGATAAATGTGCTGATTGTGGGGCCCCTGAACCGGATTGGGCATCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAACCTTG 415 0.4434 MQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHHRSTSESSSFESSDFDHCAVEESAADRSFASAHLERASRSMNQQRSCNKSEKPIDVLRKVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100492g00001 138 ProSiteProfiles PH domain profile. 1 21 IPR001849 -
Trme100492g00001 138 Pfam Putative GTPase activating protein for Arf 96 138 IPR001164 GO:0005096
Trme100492g00001 138 SUPERFAMILY ArfGap/RecO-like zinc finger 93 138 IPR037278 -
Trme100492g00001 138 PANTHER CENTAURIN/ARF 2 138 IPR045258 GO:0005096
Trme100492g00001 138 PRINTS HIV Rev interacting protein signature 124 138 IPR001164 GO:0005096
Trme100492g00001 138 PRINTS HIV Rev interacting protein signature 105 124 IPR001164 GO:0005096
Trme100492g00001 138 ProSiteProfiles ARF GTPase-activating proteins domain profile. 93 138 IPR001164 GO:0005096
Trme100492g00001 138 MobiDBLite consensus disorder prediction 40 56 - -
Trme100492g00001 138 Gene3D Arf GTPase activating protein 76 138 IPR038508 -
Trme100492g00001 138 MobiDBLite consensus disorder prediction 32 57 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100492g00001 92 138 C2H2 Transcription Factor Family AT3G07940 60.000 7.03e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100492g00001 K12489 - gmx:100798227 235.343