Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1004840g00001 CTCAGCGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGCTCCAGGTTTTTTGCCAACTGAGGAAAAGAAAGAAGACGAAGAGTTGGCAGTTCCTGCTGAAGAGGAGCAAAAAACATGTACACTATGTGGAGAGCATTTCGATCAGTTTTACAGTGATGAGACAGAGGATTGGATGTACAGAGGAGCTGTTTACCTTAATGCGCCCAATGGAATAATAACA 222 0.4505 LSGAEALGTESAPAPGFLPTEEKKEDEELAVPAEEEQKTCTLCGEHFDQFYSDETEDWMYRGAVYLNAPNGIIT 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1004840g00001 74 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 2 71 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trme1004840g00001 74 MobiDBLite consensus disorder prediction 1 37 - -
Trme1004840g00001 74 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1004840g00001 Trme-Chr1004840 3 224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1004840g00001 1 69 C2H2 Transcription Factor Family AT4G04885 69.444 1.66e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1004840g00001 K14400 - tpra:123896642 147.517