Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100478g00001 ATGATGGGAAAAGAATCTTCATTTGAATTGAATTTTGATTATGATGAATCTCATGAAACATGTGAAGAGGTGAAGGGTAAGGTTGATTTGGATATAGAACAAAATGAAAATAATAATTGTAATAAGGGGAAGAGGAAAATATCTTTGCAGCTAGATTATGATGCAATAATCATTGCATGGGATAGCCAAAAGTGTCCATGGACTAATGGAGACAAACCAAATTTTGATGCTGATGAGACTTGGCTTGATTGCATGGGAACTTATGGAACAGAAGTTCATTATCCTTATGGTGAATTTGGTGGATATGGATATCATCCAGTAATGGTAGATGGAGGAAGAGAGGCAAGAGTTTCAAGGTACAGAGAAAAGAGAAGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGAAGATTTGTAAAGAGGGCTTCTTTTGCAGTTCCAACATTTCCTTTGTTAAAATAA 504 0.3552 MMGKESSFELNFDYDESHETCEEVKGKVDLDIEQNENNNCNKGKRKISLQLDYDAIIIAWDSQKCPWTNGDKPNFDADETWLDCMGTYGTEVHYPYGEFGGYGYHPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100478g00001 167 ProSiteProfiles CCT domain profile. 113 155 IPR010402 GO:0005515
Trme100478g00001 167 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 16 156 - -
Trme100478g00001 167 Pfam CCT motif 113 155 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100478g00001 Trme-Chr100478 18 660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100478g00001 6 160 C2C2-CO-like Transcription Factor Family AT1G68520 47.337 6.15e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme100478g00001 CCT 3.3e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100478g00001 - - psat:127098417 287.345