Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100398g00001 ATGGATAGTGATTTTGAAAGAAGCTCTCTACCTAAGAAATTTACCTTTGAAGAGCTTGCTCGAGCAACTAACAACTTTGCAAAGGAACATAAAATTGGAGAAGGAGGTTTTGGAGGAGTCTACAAGGGATTCATAAAAGACTTGAAAACTCATGTTGCTATAAAGAAGGTTTCTAAGGAATCAAATCAAGGAGTTAAGGAGTATGCATCTGAAGTTAAAGTGATTAGTCAATTAAGGCATAAGAATTTGGTTCAACTTTTTGGATGGTGTCACAAACAAAATGATCTACTTTTAGTTTATGAGTTTGTGCAAAATGGAAGCTTAGATTCTTACCTTTTCAAAGGAAAAG 349 0.341 MDSDFERSSLPKKFTFEELARATNNFAKEHKIGEGGFGGVYKGFIKDLKTHVAIKKVSKESNQGVKEYASEVKVISQLRHKNLVQLFGWCHKQNDLLLVYEFVQNGSLDSYLFKGK 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100398g00001 116 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 113 - -
Trme100398g00001 116 Gene3D Phosphorylase Kinase; domain 1 11 102 - -
Trme100398g00001 116 FunFam L-type lectin-domain containing receptor kinase IX.1 11 102 - -
Trme100398g00001 116 Pfam Protein tyrosine and serine/threonine kinase 28 114 IPR001245 GO:0004672|GO:0006468
Trme100398g00001 116 ProSiteProfiles Protein kinase domain profile. 26 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme100398g00001 116 SUPERFAMILY Protein kinase-like (PK-like) 5 115 IPR011009 -
Trme100398g00001 116 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100398g00001 Trme-Chr100398 90 438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100398g00001 1 116 Receptor kinase-like Gene Family AT5G10530 54.310 6.93e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme100398g00001 PK_Tyr_Ser-Thr 2.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100398g00001 - - vvo:131635277 216.083