Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10023g00001 ATGGGTGTTTTACAATCTACATTTCTCTACCTGATTTTACTACTAGCATGCAAGGTTGCTTCTTACAAAGATGAAGTATGGAAATCTGCAACTGCAACATACATCAAAGATAAAGATAGTTCTCTCAATACAGGAGGAGCTTGTTGTTATGGAGACATTCACAAGGTTGATTATGGAAAATATAGTACTGGAATAAGCACCATTTTGTTCAATAAAGGGAGTACTTGTGGGGCTTGCTATGAGATTAGATGTGTTGATCACATCTTATGGTGCTTGATTGGAAGTCCTTCTGTAGTTGTTACTGTTACAGATTTTTGTGCACCAAATTATGGACTTTCAGCTGATTATGGTGGATGGTGTAATTTTCCAGGTGAACATTTTGAGATGTCAGAAGCTGTATTTGCTGAAATTGCCAAGAGAAAATTTGATGTAGTGCCAATTCAATATAGAAGGTAA 456 0.3618 MGVLQSTFLYLILLLACKVASYKDEVWKSATATYIKDKDSSLNTGGACCYGDIHKVDYGKYSTGISTILFNKGSTCGACYEIRCVDHILWCLIGSPSVVVTVTDFCAPNYGLSADYGGWCNFPGEHFEMSEAVFAEIAKRKFDVVPIQYRR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10023g00001 151 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Trme10023g00001 151 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Trme10023g00001 151 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Trme10023g00001 151 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Trme10023g00001 151 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Trme10023g00001 151 CDD DPBB_EXPA_N 27 151 - -
Trme10023g00001 151 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Trme10023g00001 151 PRINTS Expansin/Lol pI family signature 142 151 IPR007118 GO:0005576
Trme10023g00001 151 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Trme10023g00001 151 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Trme10023g00001 151 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Trme10023g00001 151 Pfam Lytic transglycolase 65 149 IPR009009 -
Trme10023g00001 151 Gene3D - 15 151 IPR036908 -
Trme10023g00001 151 SUPERFAMILY Barwin-like endoglucanases 11 151 IPR036908 -
Trme10023g00001 151 SMART dpbb_1 62 149 IPR007112 -
Trme10023g00001 151 PANTHER EXPANSIN-A15 9 151 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10023g00001 Trme-Chr10023 24 576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10023g00001 4 151 Expansin Gene Family AT4G38210 56.667 4.35e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10023g00001 - - gmx:100804002 258.07