Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10021g00001 ATGATCAAGGATCGACTTTGCACAAAACGTGCACTTGTTGTACTTGATGATGTGAGTGAGTTTGAGCAATTAAATGCACTTTGCGGAAATCGAAATGGGATTGGTCCAGGAAGTATAATAATCATCACAACAAGAGACGCGCGTCTACTTGATATCCTTGGAGTTGACTACATTTATGAAGCGGAGGAATTGAATGCATGCGAGTCCCTTGAACTTTTCAATTGGCATGCGTTTAGGGAGGCAAGTCCAACTGAAGGTTTCCTTAGTCTCTCAGAAGATGTAGTTTACTATTGTGGTGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACCTATTTAAGAGGACAAAACACGAGTGGCACAGTGTATTATCAAAGCTAAAAAAGATACCCAATGATCAAATACATGACAAACTAAAAATAAGCTTTGATGGTTTAAGGGACCATATGGAAAAGGATATATTTCTTGATGTCAGTTGTTTCTTTATCGGTAAGGATAGAGCTTATGTTACAGAGATATTAAATGGCTGTGGACTTCATGCTGATATTGGACTAACCGTGCTGATAGAGAGAAGCCTCATAAAAGTTGAAAATAATAACAAGCTCAGAATGCATTCATTGCTACGTGACATGGGAAGAGAAATTGTCCGTGAAAGTTCACCTGAGGAGCCTGAAAAGCGTAGTCGTTTGTGGTGTCATGAAGATGTAGTTGATGTATTGACCGACCATAACGGAACAAAAGCCATTGAAGGATTGGTTATGAAGTTGCAAATGACCAGTTGTGTTTGCTTCGATACAAGTGCTTTTGAGAAAATGAAGAGATTGAGATTGTTGCAACTTGAGCATGTACAACTCAATGGAGATTATGAGTGTTTTCCGAAGCACCTGAGATGGCTCTCTTGGCAAGGATTTCCCTTAAAATACACGCCAGAAAACTTTTATCAGAAAAATCTAGTTGCTATGGACTTTAAACACATTGATAGAGGGACTGAAGATCCTAAATCTCAGTCATTCCAAGTACTTGAAAAGCACCCCGGACTTTTCAAACTTACCGAACCTAGAAAAGCTCATTATGAAGGATTGTCAAAGTTTGTCTGA 1098 0.3916 MIKDRLCTKRALVVLDDVSEFEQLNALCGNRNGIGPGSIIIITTRDARLLDILGVDYIYEAEELNACESLELFNWHAFREASPTEGFLSLSEDVVYYCGGLPLALEVLGSYLFKRTKHEWHSVLSKLKKIPNDQIHDKLKISFDGLRDHMEKDIFLDVSCFFIGKDRAYVTEILNGCGLHADIGLTVLIERSLIKVENNNKLRMHSLLRDMGREIVRESSPEEPEKRSRLWCHEDVVDVLTDHNGTKAIEGLVMKLQMTSCVCFDTSAFEKMKRLRLLQLEHVQLNGDYECFPKHLRWLSWQGFPLKYTPENFYQKNLVAMDFKHIDRGTEDPKSQSFQVLEKHPGLFKLTEPRKAHYEGLSKFV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10021g00001 365 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 325 IPR044974 GO:0006952
Trme10021g00001 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 157 IPR027417 -
Trme10021g00001 365 Gene3D - 63 147 IPR042197 -
Trme10021g00001 365 Pfam NB-ARC domain 2 133 IPR002182 GO:0043531
Trme10021g00001 365 SUPERFAMILY "Winged helix" DNA-binding domain 134 240 IPR036390 -
Trme10021g00001 365 Gene3D - 1 56 IPR027417 -
Trme10021g00001 365 PRINTS Disease resistance protein signature 98 112 - -
Trme10021g00001 365 PRINTS Disease resistance protein signature 270 286 - -
Trme10021g00001 365 PRINTS Disease resistance protein signature 5 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10021g00001 Trme-Chr10021 119 1510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10021g00001 1 325 WRKY Transcription Factor Family AT5G45050 34.375 4.42e-53 187