Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100148g00001 ACATTCAAGCGTAGGAACGGAGGTCGCAACAAGCATGGCCGTGGCCATGTCAAATTCATCCGTTGCTCTAACTGCGGAAAATGCTGCCCTAAGGATAAGGCTATTAAGCGTTTCCTTGTGAGGAACATTGTTGAACAAGCTGCAGTGAGAGATGTTCAGGAAGCTTGTGTTTATGATCAATACACTCTTCCTAAGCTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCTCATGTTGTGAGGGTCAGATCTCGCACTGATAGGAGGAAGCGTGAGCCTCCACAGCGTTTCATCAGGCGCAGG 312 0.4808 TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100148g00001 104 PANTHER 40S RIBOSOMAL PROTEIN S26 1 103 IPR000892 GO:0003735|GO:0005840|GO:0006412
Trme100148g00001 104 ProSitePatterns Ribosomal protein S26e signature. 72 79 IPR000892 GO:0003735|GO:0005840|GO:0006412
Trme100148g00001 104 FunFam 40S ribosomal protein S26 1 104 - -
Trme100148g00001 104 Pfam Ribosomal protein S26e 1 103 IPR000892 GO:0003735|GO:0005840|GO:0006412
Trme100148g00001 104 Gene3D Ribosomal protein S26e 1 104 IPR038551 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100148g00001 Trme-Chr100148 157 678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100148g00001 1 104 Cytoplasmic Ribosomal Protein Gene Family AT3G56340 85.577 5.00e-62 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme100148g00001 K02976 - gmx:100784958 203.756