Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10008g00001 ATGATGCTTTCGTTTTTATCATTGGCAGAAAATATAACCGAGGAATTGGGTACAAGCGACGTTCCTCCAATTGAAGTTGTGAAGATTATAAACGGAACTTTCTCTAAGATAGAGAAGGATTTTACCTTGCTAGCTGAGTGTGGCTATAGGGATAACAAGCCATCCATGAGCATTGTAAGCTCGGGATGCTTAGTTTCCCTCATTTGGGGGCAAAAGGTGTTTACGGCTAATGTAGGAGACTCTCGTGCGGTAATCTGCTATGACAGGCCTGACGGTCCAGGCTGGTGTGGTAAAGAAATGGCAAGAGATAACAGTTGTTGTGAACAATCATATATTCGACAACCATCACATCCGAAAACTAGGTGCATAGGAAACGCGCATTTAAAGATGGCGCACTTTACTACAGAGGAATCCTTTGAAGCCCCGGAAGAGGACAGGGTCGAAAACAATTTCACAGAATCTGTGCTGTCAGCAATACCAAAAGTTTCCGTAAGAGACATAAAAGAAACGGATAGATTCATTATATTTGGATCTGGTGGACTTTGGAAACTGTTGACGAACGAGCAAGCTGCTAAGTTTGTTAACTCTCGGCCGCGTGGGGGAATCGCAAGGAAACTTGCAACTTACGCTGTAAAGCTTGCAGCTGAAAAATCAGGTCTAACTTACAGTAAAATGATGCTTGTTCCTGAGGGAACGGATATGAGTGGAAGATCGTGTGTATCTTCTGAACCTGTTAGGCCGATTTACCATGATGATATTACTGTAGCAGTCGTATATTTGGACATCAATAAGAATATAGACAGCAAGACATTTTACAGCTACCACAGCCATTCTTATAATGTTCTACCATCAGGTTTTAAAGATGATCTGGATATTGTCAAAAAGAAAAAAGATGATCCGGATAATCAACCAAAAAATAGAAAGAAAGTTTCAAAAGTTTACAGCATATGGGATGACTAA 960 0.4083 MMLSFLSLAENITEELGTSDVPPIEVVKIINGTFSKIEKDFTLLAECGYRDNKPSMSIVSSGCLVSLIWGQKVFTANVGDSRAVICYDRPDGPGWCGKEMARDNSCCEQSYIRQPSHPKTRCIGNAHLKMAHFTTEESFEAPEEDRVENNFTESVLSAIPKVSVRDIKETDRFIIFGSGGLWKLLTNEQAAKFVNSRPRGGIARKLATYAVKLAAEKSGLTYSKMMLVPEGTDMSGRSCVSSEPVRPIYHDDITVAVVYLDINKNIDSKTFYSYHSHSYNVLPSGFKDDLDIVKKKKDDPDNQPKNRKKVSKVYSIWDD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10008g00001 319 MobiDBLite consensus disorder prediction 295 319 - -
Trme10008g00001 319 CDD PP2Cc 8 260 IPR001932 -
Trme10008g00001 319 Pfam Protein phosphatase 2C 120 216 IPR001932 -
Trme10008g00001 319 Pfam Protein phosphatase 2C 52 91 IPR001932 -
Trme10008g00001 319 SUPERFAMILY PP2C-like 16 261 IPR036457 -
Trme10008g00001 319 PANTHER PROTEIN PHOSPHATASE 31 258 IPR015655 GO:0004722|GO:0006470
Trme10008g00001 319 Gene3D - 3 268 IPR036457 -
Trme10008g00001 319 ProSiteProfiles PPM-type phosphatase domain profile. 1 260 IPR001932 -
Trme10008g00001 319 SMART PP2C_4 3 258 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10008g00001 Trme-Chr10008 600 1631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10008g00001 30 261 PP2C-type Phosphatase Gene Family AT5G06750 33.333 3.38e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10008g00001 K01102 - tpra:123898969 147.132