Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme100052g00001 TTCAGTTTACAAATTGAAGCCGGATCTAAGGTCGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCATCTGTATTGGCCCTTTTACTGAGATTTTATGATCCAGTGGTGGGAAAAGTATTAATTGATGGGAAAGACGTGAAGGAATATAATCTAAGATGGTTAAGGACACAGATAGGGCTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTAGAGACAATATTTGCTATGGCAATAAAGCGGCTTCTGAAAGTGAAATTGTGGAGGTTTCGAGAGAAGCAAATATACATGAATTTGTAAGTAATCTACCAAATGGATATGACACTGTTGTTGGCGAGAAAGGCTGCCAGCTTTCAGGAGGACAGAAACAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCAGCAATATTACTCCTTGATGAAGCAACGAGTGCCCTCGATGCTGAGTCCGAAAGAACTATAGTAAATGCAATTAAAGCAATGAATCTGAAGGAAGAAAGTGGGTTGTGTTCAAGAATCACCCAGATCACAGTAGCTCATAGACTTTCAACAGTCAGAAACTCGGATACCATAATCGTCATGGAAAAAGAGCTTTGA 606 0.4026 FSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVVGKVLIDGKDVKEYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNKAASESEIVEVSREANIHEFVSNLPNGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKAMNLKEESGLCSRITQITVAHRLSTVRNSDTIIVMEKEL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme100052g00001 201 ProSitePatterns ABC transporters family signature. 119 133 IPR017871 GO:0005524|GO:0016887
Trme100052g00001 201 Gene3D - 1 200 IPR027417 -
Trme100052g00001 201 Pfam ABC transporter 2 147 IPR003439 GO:0005524
Trme100052g00001 201 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 199 IPR039421 -
Trme100052g00001 201 FunFam ABC multidrug transporter mdr4 1 201 - -
Trme100052g00001 201 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 201 IPR003439 GO:0005524
Trme100052g00001 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 199 IPR027417 -
Trme100052g00001 201 SMART AAA_5 7 201 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme100052g00001 Trme-Chr100052 2 687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme100052g00001 1 199 Calmodulin-binding Proteins AT2G36910 54.271 7.93e-67 219